HL_3J77_104

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

3J77|1|2S|G|3116, 3J77|1|2S|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_104 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1911

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|C|3110
3J77|1|2S|U|3111
3J77|1|2S|G|3112
3J77|1|2S|A|3113
3J77|1|2S|A|3114
3J77|1|2S|C|3115
3J77|1|2S|G|3116
3J77|1|2S|C|3117
3J77|1|2S|C|3118
3J77|1|2S|U|3119
3J77|1|2S|C|3120
3J77|1|2S|U|3121
3J77|1|2S|A|3122
3J77|1|2S|A|3123
3J77|1|2S|G|3124

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L16

Chain 90

60S ribosomal protein L40

Chain L9

60S ribosomal protein L9