HL_3J77_109

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

3J77|1|5S|C|39, 3J77|1|5S|C|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_109 not in the Motif Atlas

Geometric match to HL_5TBW_185

Geometric discrepancy: 0.3288

The information below is about HL_5TBW_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83767.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

3J77|1|5S|C|36
3J77|1|5S|G|37
3J77|1|5S|U|38
3J77|1|5S|C|39
3J77|1|5S|C|40
3J77|1|5S|G|41

Current chains

Chain 5S

5S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 61

60S ribosomal protein L11

Chain L5

60S ribosomal protein L5