HL_3J77_114

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

3J77|1|PT|C|16, 3J77|1|PT|G|19, 3J77|1|PT|G|20, 3J77|1|PT|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_114 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.3473

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

3J77|1|PT|C|13
3J77|1|PT|A|14
3J77|1|PT|G|15
3J77|1|PT|C|16
3J77|1|PT|C|17
3J77|1|PT|U|18|||A
3J77|1|PT|G|19
3J77|1|PT|G|20
3J77|1|PT|U|21
3J77|1|PT|A|22
3J77|1|PT|G|23

Current chains

Chain PT

P/E-site initiator transfer RNAfMet

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain L1

60S ribosomal protein L1