HL_3J77_117

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

3J77|1|1S|G|765, 3J77|1|1S|U|767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_117 not in the Motif Atlas

Homologous match to HL_8P9A_206

Geometric discrepancy: 0.2566

The information below is about HL_8P9A_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

3J77|1|1S|U|764
3J77|1|1S|G|765
3J77|1|1S|U|766
3J77|1|1S|U|767
3J77|1|1S|C|768
3J77|1|1S|A|769
3J77|1|1S|A|770
3J77|1|1S|A|771
3J77|1|1S|G|772

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S4

40S ribosomal protein S4

Chain S9

40S ribosomal protein S9