HL_3J77_118

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

3J77|1|2S|U|545, 3J77|1|2S|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_118 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.5375

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J77|1|2S|G|542
3J77|1|2S|C|543
3J77|1|2S|C|544
3J77|1|2S|U|545
3J77|1|2S|C|546
3J77|1|2S|G|547
3J77|1|2S|G|548
3J77|1|2S|U|549

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 70

60S ribosomal protein L20

Chain L9

60S ribosomal protein L9