HL_3J77_123

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGGAGCUUCGGCGCCAGUGAAAUACC

Length

26 nucleotides

Bulged bases

3J77|1|2S|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J77|1|2S|G|2465
3J77|1|2S|G|2466
3J77|1|2S|G|2467
3J77|1|2S|A|2468
3J77|1|2S|G|2469
3J77|1|2S|C|2470
3J77|1|2S|U|2471
3J77|1|2S|U|2472
3J77|1|2S|C|2473
3J77|1|2S|G|2474
3J77|1|2S|G|2475
3J77|1|2S|C|2476
3J77|1|2S|G|2477
3J77|1|2S|C|2478
3J77|1|2S|C|2479
3J77|1|2S|A|2480
3J77|1|2S|G|2481
3J77|1|2S|U|2482
3J77|1|2S|G|2483
3J77|1|2S|A|2484
3J77|1|2S|A|2485
3J77|1|2S|A|2486
3J77|1|2S|U|2487
3J77|1|2S|A|2488
3J77|1|2S|C|2489
3J77|1|2S|C|2490

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 25

40S ribosomal protein S25

Chain L1

60S ribosomal protein L1

Chain PT

Transfer RNA; tRNA