HL_3J78_001
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 3J78|1|1S|U|9
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_001 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.1431
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J78|1|1S|G|7
3J78|1|1S|U|8
3J78|1|1S|U|9
3J78|1|1S|G|10
3J78|1|1S|A|11
3J78|1|1S|U|12
3J78|1|1S|C|13
3J78|1|1S|C|14
3J78|1|1S|U|15
3J78|1|1S|G|16
3J78|1|1S|C|17
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain S2
- 40S ribosomal protein S2
Coloring options: