Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_3J78_001No text annotation
HL_3J78_002No text annotation
HL_3J78_003GNRA related
HL_3J78_004No text annotation
HL_3J78_005No text annotation
HL_3J78_006T-loop with 1 bulged base
HL_3J78_007Mini UNCG
HL_3J78_008GNRA related
HL_3J78_009No text annotation
HL_3J78_010No text annotation
HL_3J78_011UNCG
HL_3J78_012No text annotation
HL_3J78_122No text annotation
HL_3J78_013No text annotation
HL_3J78_014No text annotation
HL_3J78_015GNRA variation
HL_3J78_016No text annotation
HL_3J78_017No text annotation
HL_3J78_018No text annotation
HL_3J78_019No text annotation
HL_3J78_020Pseudoknot geometry
HL_3J78_021No text annotation
HL_3J78_022GNRA
HL_3J78_023No text annotation
HL_3J78_024No text annotation
HL_3J78_025GNRA
HL_3J78_026GNRA
HL_3J78_027No text annotation
HL_3J78_028Anticodon loop related
HL_3J78_029GNRA
HL_3J78_030No text annotation
HL_3J78_031No text annotation
HL_3J78_032No text annotation
HL_3J78_123No text annotation
HL_3J78_033GNRA
HL_3J78_034No text annotation
HL_3J78_035No text annotation
HL_3J78_036No text annotation
HL_3J78_037GNRA variation
HL_3J78_038No text annotation
HL_3J78_039No text annotation
HL_3J78_040No text annotation
HL_3J78_041No text annotation
HL_3J78_042T-loop with 2 stacked bulged bases
HL_3J78_043No text annotation
HL_3J78_044T-loop with unstacked turn
HL_3J78_045No text annotation
HL_3J78_046Pseudoknot geometry
HL_3J78_047GNRA
HL_3J78_048GNRA
HL_3J78_049No text annotation
HL_3J78_050GNRA
HL_3J78_051T-loop with 2 stacked bulged bases
HL_3J78_052No text annotation
HL_3J78_053GNRA
HL_3J78_054GNRA
HL_3J78_055No text annotation
HL_3J78_056GNRA
HL_3J78_057No text annotation
HL_3J78_058No text annotation
HL_3J78_059Externally structured
HL_3J78_060GNRA
HL_3J78_061T-loop related
HL_3J78_062GNRA
HL_3J78_063No text annotation
HL_3J78_064No text annotation
HL_3J78_065GNRA wlth tandem sheared
HL_3J78_066No text annotation
HL_3J78_067GNRA
HL_3J78_068T-loop with 2 stacked bulged bases
HL_3J78_069Pseudoknot geometry with 3' bulge
HL_3J78_070GNRA variation
HL_3J78_071No text annotation
HL_3J78_072No text annotation
HL_3J78_073GNRA
HL_3J78_074No text annotation
HL_3J78_075No text annotation
HL_3J78_076No text annotation
HL_3J78_077Mini UNCG
HL_3J78_078No text annotation
HL_3J78_079GNRA
HL_3J78_080UNCG
HL_3J78_081No text annotation
HL_3J78_082No text annotation
HL_3J78_083No text annotation
HL_3J78_084GNRA
HL_3J78_085GNRA
HL_3J78_086No text annotation
HL_3J78_087No text annotation
HL_3J78_088No text annotation
HL_3J78_089No text annotation
HL_3J78_090No text annotation
HL_3J78_126No text annotation
HL_3J78_091Externally structured
HL_3J78_092No text annotation
HL_3J78_093No text annotation
HL_3J78_094No text annotation
HL_3J78_095Pseudoknot geometry
HL_3J78_096No text annotation
HL_3J78_097GNRA
HL_3J78_098Pseudoknot geometry
HL_3J78_099No text annotation
HL_3J78_100No text annotation
HL_3J78_101No text annotation
HL_3J78_102GNRA
HL_3J78_103GNRA
HL_3J78_104Ribsomal LSU H95
HL_3J78_105No text annotation
HL_3J78_106No text annotation
HL_3J78_107No text annotation
HL_3J78_108No text annotation
HL_3J78_109No text annotation
HL_3J78_124No text annotation
HL_3J78_110No text annotation
HL_3J78_111GNRA
HL_3J78_112Pseudoknot with intercalation
HL_3J78_113No text annotation
HL_3J78_114No text annotation
HL_3J78_115No text annotation
HL_3J78_125No text annotation
HL_3J78_116No text annotation
HL_3J78_117tRNA anticodon loop
HL_3J78_118T-loop with 2 stacked bulged bases
HL_3J78_119tRNA D-loop
HL_3J78_120tRNA anticodon loop
HL_3J78_121T-loop with 2 stacked bulged bases

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
IL_3J78_001Single bulged C
IL_3J78_002Isolated non-canonical cWW pair
IL_3J78_003Triple sheared related
IL_3J78_004No text annotation
IL_3J78_005Minor groove platform
IL_3J78_006No text annotation
IL_3J78_007No text annotation
IL_3J78_008Tandem non-canonical cWW pairs
IL_3J78_009Multiple bulged bases
IL_3J78_010No text annotation
IL_3J78_011tWH-tWH-tHW-tHW
IL_3J78_012Isolated non-canonical cWW contact
IL_3J78_013Double sheared
IL_3J78_014Major groove platform with extra cWW
IL_3J78_015Isolated non-canonical cWW pair
IL_3J78_016Single bulged A
IL_3J78_017No text annotation
IL_3J78_018Isolated non-canonical cWW pair
IL_3J78_019Kink-turn with non-sequential stacking
IL_3J78_020No text annotation
IL_3J78_021No text annotation
IL_3J78_022Isolated cWH basepair
IL_3J78_023Isolated near basepair
IL_3J78_024Single bulged U
IL_3J78_025C-loop
IL_3J78_026Single bulged G
IL_3J78_027No text annotation
IL_3J78_028Single stack bend
IL_3J78_029Single stack bend
IL_3J78_030SSU/LSU pseudoknot
IL_3J78_031Single bulged U
IL_3J78_032Kink-turn related
IL_3J78_033No text annotation
IL_3J78_034Isolated non-canonical cWW pair
IL_3J78_035tSH-tHW-tHS
IL_3J78_036No text annotation
IL_3J78_037Major groove minor groove platform; mini C-loop
IL_3J78_038Isolated non-canonical cWW pair
IL_3J78_039No text annotation
IL_3J78_040No text annotation
IL_3J78_041Isolated cWH basepair
IL_3J78_042Major groove platform; stack outside cWW
IL_3J78_043Isolated non-canonical cWW pair
IL_3J78_228Single bulged U
IL_3J78_229Isolated non-canonical cWW pair
IL_3J78_044Tandem non-canonical cWW pairs
IL_3J78_045Tandem non-canonical cWW pairs
IL_3J78_046Isolated non-canonical cWW pair
IL_3J78_047Kink-turn related
IL_3J78_048Other IL
IL_3J78_049tSH-tHW-tHS
IL_3J78_050No text annotation
IL_3J78_230Tandem non-canonical cWW pairs
IL_3J78_051No text annotation
IL_3J78_052Single bulged U
IL_3J78_0538x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3J78_054Single bulged A
IL_3J78_055Single bulged G
IL_3J78_056C-loop
IL_3J78_057Isolated non-canonical cWW pair
IL_3J78_058Minor groove platform
IL_3J78_059Isolated non-canonical cWW pair
IL_3J78_060No text annotation
IL_3J78_231Kink-turn
IL_3J78_061No text annotation
IL_3J78_232No text annotation
IL_3J78_062No text annotation
IL_3J78_063Single bulged U
IL_3J78_064Isolated cWS basepair
IL_3J78_233No text annotation
IL_3J78_065Minor groove platform with extra cWW
IL_3J78_066Single bulged A
IL_3J78_067Isolated cWH basepair
IL_3J78_068Minor groove platform
IL_3J78_069Isolated non-canonical cWW pair
IL_3J78_070Minor groove platform
IL_3J78_234No text annotation
IL_3J78_071No text annotation
IL_3J78_072Major groove platform; stack outside cWW
IL_3J78_251No text annotation
IL_3J78_235No text annotation
IL_3J78_073180 degree turn
IL_3J78_074Tandem non-canonical cWW pairs
IL_3J78_075No text annotation
IL_3J78_076No text annotation
IL_3J78_077No text annotation
IL_3J78_078Isolated non-canonical cWW pair
IL_3J78_079No text annotation
IL_3J78_080Isolated non-canonical cWW pair
IL_3J78_081Double sheared
IL_3J78_082No text annotation
IL_3J78_083Isolated non-canonical cWW pair
IL_3J78_084Double sheared
IL_3J78_085Isolated non-canonical cWW pair
IL_3J78_086Tandem non-canonical cWW pairs
IL_3J78_087Triple sheared
IL_3J78_088Not an internal loop
IL_3J78_236No text annotation
IL_3J78_089Single bulged C
IL_3J78_090No text annotation
IL_3J78_237No text annotation
IL_3J78_252No text annotation
IL_3J78_091No text annotation
IL_3J78_092No text annotation
IL_3J78_0938x7 Sarcin-Ricin; G-bulge
IL_3J78_094No text annotation
IL_3J78_095Isolated non-canonical cWW pair
IL_3J78_096Single stack bend
IL_3J78_097No text annotation
IL_3J78_098No text annotation
IL_3J78_253Major groove platform
IL_3J78_238No text annotation
IL_3J78_099Single bulged U
IL_3J78_100Single bulged A
IL_3J78_101No text annotation
IL_3J78_102No text annotation
IL_3J78_103Isolated non-canonical cWW pair
IL_3J78_104No text annotation
IL_3J78_105Single bulged A
IL_3J78_239No text annotation
IL_3J78_106No text annotation
IL_3J78_107No text annotation
IL_3J78_108Isolated non-canonical cWW pair
IL_3J78_109No text annotation
IL_3J78_110No text annotation
IL_3J78_111Single bulged A
IL_3J78_112Single bulged U
IL_3J78_113No text annotation
IL_3J78_114Isolated non-canonical cWW pair
IL_3J78_115tHW-tHW cross-strand stack
IL_3J78_116Single bulged G
IL_3J78_117Triple sheared
IL_3J78_118Major groove platform with extra cWW
IL_3J78_119Single bulged U
IL_3J78_120Multiple bulged bases
IL_3J78_121Isolated non-canonical cWW pair
IL_3J78_122No text annotation
IL_3J78_123180 degree turn
IL_3J78_124Single bulged G
IL_3J78_125No text annotation
IL_3J78_126Minor groove platform
IL_3J78_127C-loop
IL_3J78_128Tandem non-canonical cWW pairs
IL_3J78_129Isolated non-canonical cWW pair
IL_3J78_240No text annotation
IL_3J78_130No text annotation
IL_3J78_241Isolated non-canonical cWW pair
IL_3J78_131Tandem non-canonical cWW pairs
IL_3J78_132Other IL
IL_3J78_242Single bulged G
IL_3J78_133Isolated non-canonical cWW pair
IL_3J78_134UAA/GAN
IL_3J78_135SSU/LSU pseudoknot
IL_3J78_136Single bulged U
IL_3J78_137No text annotation
IL_3J78_138No text annotation
IL_3J78_139Single bulged U
IL_3J78_140Kink-turn
IL_3J78_141No text annotation
IL_3J78_142Major groove platform with extra cWW
IL_3J78_143No text annotation
IL_3J78_243No text annotation
IL_3J78_144Single bulged A
IL_3J78_145Kink-turn
IL_3J78_146Single bulged A
IL_3J78_147No text annotation
IL_3J78_148No text annotation
IL_3J78_244C-loop
IL_3J78_149UAA/GAN
IL_3J78_150No text annotation
IL_3J78_254No text annotation
IL_3J78_151No text annotation
IL_3J78_255Major groove platform related
IL_3J78_245No text annotation
IL_3J78_152Multiple bulged bases with near cWW
IL_3J78_153No text annotation
IL_3J78_154Triple sheared
IL_3J78_155Isolated non-canonical cWW pair
IL_3J78_156Single bulged C
IL_3J78_157Single stack bend
IL_3J78_158No text annotation
IL_3J78_159No text annotation
IL_3J78_160Kink-turn
IL_3J78_161No text annotation
IL_3J78_162No text annotation
IL_3J78_163Major groove platform; stack outside cWW
IL_3J78_246No text annotation
IL_3J78_164Intercalated tWH
IL_3J78_165No text annotation
IL_3J78_166Isolated non-canonical cWW pair
IL_3J78_167No text annotation
IL_3J78_247No text annotation
IL_3J78_168Single bulged A
IL_3J78_169Kink-turn related
IL_3J78_170No text annotation
IL_3J78_171Major groove intercalation
IL_3J78_172No text annotation
IL_3J78_173No text annotation
IL_3J78_174Bulged stacked bases
IL_3J78_175No text annotation
IL_3J78_176No text annotation
IL_3J78_177Major groove platform with intercalation
IL_3J78_178Single bulged U
IL_3J78_179Minor groove platform
IL_3J78_180No text annotation
IL_3J78_248No text annotation
IL_3J78_181No text annotation
IL_3J78_182Single bulged A
IL_3J78_183No text annotation
IL_3J78_184Tandem non-canonical cWW pairs
IL_3J78_185Single stack bend
IL_3J78_186No text annotation
IL_3J78_249No text annotation
IL_3J78_187Major groove platform
IL_3J78_188Major groove minor groove platform with extra cWW
IL_3J78_189No text annotation
IL_3J78_190Major groove platform
IL_3J78_191No text annotation
IL_3J78_192No text annotation
IL_3J78_193No text annotation
IL_3J78_194Isolated non-canonical cWW pair
IL_3J78_195Single bulged A
IL_3J78_196Double sheared
IL_3J78_197Isolated non-canonical cWW pair
IL_3J78_1988x7 Sarcin-Ricin; G-bulge
IL_3J78_199Major groove minor groove platform with tHH
IL_3J78_200UAA/GAN related
IL_3J78_201No text annotation
IL_3J78_202UAA/GAN
IL_3J78_203Tandem non-canonical cWW pairs
IL_3J78_204Isolated non-canonical cWW pair
IL_3J78_205Single bulged A
IL_3J78_206No text annotation
IL_3J78_207Single bulged U
IL_3J78_250No text annotation
IL_3J78_208No text annotation
IL_3J78_209Isolated non-canonical cWW pair
IL_3J78_210Tandem non-canonical cWW pairs
IL_3J78_211Tandem non-canonical cWW pairs
IL_3J78_212Single bulged U
IL_3J78_213Single bulged U
IL_3J78_214No text annotation
IL_3J78_215No text annotation
IL_3J78_216Single bulged U
IL_3J78_217Double sheared; A in syn
IL_3J78_218No text annotation
IL_3J78_219Single bulged A
IL_3J78_220Minor groove platform related
IL_3J78_221Minor groove platform
IL_3J78_222Single stack bend
IL_3J78_223Symmetric double minor groove platform
IL_3J78_2248x7 Sarcin-Ricin; G-bulge
IL_3J78_225Isolated non-canonical cWW pair
IL_3J78_226Isolated non-canonical cWW pair
IL_3J78_227Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J5_3J78_0031/1S/124:143,
1/1S/172:182,
1/1S/203:204,
1/1S/263:265,
1/1S/289:293
No text annotation
J5_3J78_0041/1S/124:143,
1/1S/172:182,
1/1S/203:204,
1/1S/263:267,
1/1S/288:293
No text annotation

Problematic loops

#loop idProblemSequence
J3_3J78_001No text annotation
J3_3J78_032No text annotation
J3_3J78_002No text annotation
J3_3J78_033No text annotation
J3_3J78_003No text annotation
J3_3J78_004No text annotation
J3_3J78_005No text annotation
J3_3J78_006No text annotation
J3_3J78_007No text annotation
J3_3J78_008No text annotation
J3_3J78_009No text annotation
J3_3J78_010No text annotation
J3_3J78_011No text annotation
J3_3J78_012No text annotation
J3_3J78_034No text annotation
J3_3J78_013No text annotation
J3_3J78_014No text annotation
J3_3J78_035No text annotation
J3_3J78_036No text annotation
J3_3J78_015No text annotation
J3_3J78_045No text annotation
J3_3J78_037No text annotation
J3_3J78_046No text annotation
J3_3J78_038No text annotation
J3_3J78_016No text annotation
J3_3J78_017No text annotation
J3_3J78_018No text annotation
J3_3J78_019No text annotation
J3_3J78_020No text annotation
J3_3J78_021No text annotation
J3_3J78_022No text annotation
J3_3J78_023No text annotation
J3_3J78_039No text annotation
J3_3J78_024No text annotation
J3_3J78_040No text annotation
J3_3J78_041No text annotation
J3_3J78_042No text annotation
J3_3J78_025No text annotation
J3_3J78_026No text annotation
J3_3J78_043No text annotation
J3_3J78_027No text annotation
J3_3J78_028No text annotation
J3_3J78_044No text annotation
J3_3J78_029No text annotation
J3_3J78_030No text annotation
J3_3J78_031No text annotation
J4_3J78_001No text annotation
J4_3J78_002No text annotation
J4_3J78_003No text annotation
J4_3J78_004No text annotation
J4_3J78_013No text annotation
J4_3J78_005No text annotation
J4_3J78_006No text annotation
J4_3J78_007No text annotation
J4_3J78_008No text annotation
J4_3J78_009No text annotation
J4_3J78_010No text annotation
J4_3J78_011tRNA junction
J4_3J78_012tRNA junction
J5_3J78_001No text annotation
J5_3J78_002No text annotation
J5_3J78_005No text annotation
J5_3J78_006No text annotation
J5_3J78_007No text annotation
J5_3J78_008No text annotation
J5_3J78_009No text annotation
J5_3J78_010No text annotation
J5_3J78_011No text annotation
J5_3J78_012No text annotation
J6_3J78_003No text annotation
J6_3J78_001No text annotation
J6_3J78_002No text annotation
J7_3J78_001No text annotation

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