3J78 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_3J78_001 | No text annotation | ||
HL_3J78_002 | No text annotation | ||
HL_3J78_003 | GNRA related | ||
HL_3J78_004 | No text annotation | ||
HL_3J78_005 | No text annotation | ||
HL_3J78_006 | T-loop with 1 bulged base | ||
HL_3J78_007 | Mini UNCG | ||
HL_3J78_008 | GNRA related | ||
HL_3J78_009 | No text annotation | ||
HL_3J78_010 | No text annotation | ||
HL_3J78_011 | UNCG | ||
HL_3J78_012 | No text annotation | ||
HL_3J78_122 | No text annotation | ||
HL_3J78_013 | No text annotation | ||
HL_3J78_014 | No text annotation | ||
HL_3J78_015 | GNRA variation | ||
HL_3J78_016 | No text annotation | ||
HL_3J78_017 | No text annotation | ||
HL_3J78_018 | No text annotation | ||
HL_3J78_019 | No text annotation | ||
HL_3J78_020 | Pseudoknot geometry | ||
HL_3J78_021 | No text annotation | ||
HL_3J78_022 | GNRA | ||
HL_3J78_023 | No text annotation | ||
HL_3J78_024 | No text annotation | ||
HL_3J78_025 | GNRA | ||
HL_3J78_026 | GNRA | ||
HL_3J78_027 | No text annotation | ||
HL_3J78_028 | Anticodon loop related | ||
HL_3J78_029 | GNRA | ||
HL_3J78_030 | No text annotation | ||
HL_3J78_031 | No text annotation | ||
HL_3J78_032 | No text annotation | ||
HL_3J78_123 | No text annotation | ||
HL_3J78_033 | GNRA | ||
HL_3J78_034 | No text annotation | ||
HL_3J78_035 | No text annotation | ||
HL_3J78_036 | No text annotation | ||
HL_3J78_037 | GNRA variation | ||
HL_3J78_038 | No text annotation | ||
HL_3J78_039 | No text annotation | ||
HL_3J78_040 | No text annotation | ||
HL_3J78_041 | No text annotation | ||
HL_3J78_042 | T-loop with 2 stacked bulged bases | ||
HL_3J78_043 | No text annotation | ||
HL_3J78_044 | T-loop with unstacked turn | ||
HL_3J78_045 | No text annotation | ||
HL_3J78_046 | Pseudoknot geometry | ||
HL_3J78_047 | GNRA | ||
HL_3J78_048 | GNRA | ||
HL_3J78_049 | No text annotation | ||
HL_3J78_050 | GNRA | ||
HL_3J78_051 | T-loop with 2 stacked bulged bases | ||
HL_3J78_052 | No text annotation | ||
HL_3J78_053 | GNRA | ||
HL_3J78_054 | GNRA | ||
HL_3J78_055 | No text annotation | ||
HL_3J78_056 | GNRA | ||
HL_3J78_057 | No text annotation | ||
HL_3J78_058 | No text annotation | ||
HL_3J78_059 | Externally structured | ||
HL_3J78_060 | GNRA | ||
HL_3J78_061 | T-loop related | ||
HL_3J78_062 | GNRA | ||
HL_3J78_063 | No text annotation | ||
HL_3J78_064 | No text annotation | ||
HL_3J78_065 | GNRA wlth tandem sheared | ||
HL_3J78_066 | No text annotation | ||
HL_3J78_067 | GNRA | ||
HL_3J78_068 | T-loop with 2 stacked bulged bases | ||
HL_3J78_069 | Pseudoknot geometry with 3' bulge | ||
HL_3J78_070 | GNRA variation | ||
HL_3J78_071 | No text annotation | ||
HL_3J78_072 | No text annotation | ||
HL_3J78_073 | GNRA | ||
HL_3J78_074 | No text annotation | ||
HL_3J78_075 | No text annotation | ||
HL_3J78_076 | No text annotation | ||
HL_3J78_077 | Mini UNCG | ||
HL_3J78_078 | No text annotation | ||
HL_3J78_079 | GNRA | ||
HL_3J78_080 | UNCG | ||
HL_3J78_081 | No text annotation | ||
HL_3J78_082 | No text annotation | ||
HL_3J78_083 | No text annotation | ||
HL_3J78_084 | GNRA | ||
HL_3J78_085 | GNRA | ||
HL_3J78_086 | No text annotation | ||
HL_3J78_087 | No text annotation | ||
HL_3J78_088 | No text annotation | ||
HL_3J78_089 | No text annotation | ||
HL_3J78_090 | No text annotation | ||
HL_3J78_126 | No text annotation | ||
HL_3J78_091 | Externally structured | ||
HL_3J78_092 | No text annotation | ||
HL_3J78_093 | No text annotation | ||
HL_3J78_094 | No text annotation | ||
HL_3J78_095 | Pseudoknot geometry | ||
HL_3J78_096 | No text annotation | ||
HL_3J78_097 | GNRA | ||
HL_3J78_098 | Pseudoknot geometry | ||
HL_3J78_099 | No text annotation | ||
HL_3J78_100 | No text annotation | ||
HL_3J78_101 | No text annotation | ||
HL_3J78_102 | GNRA | ||
HL_3J78_103 | GNRA | ||
HL_3J78_104 | Ribsomal LSU H95 | ||
HL_3J78_105 | No text annotation | ||
HL_3J78_106 | No text annotation | ||
HL_3J78_107 | No text annotation | ||
HL_3J78_108 | No text annotation | ||
HL_3J78_109 | No text annotation | ||
HL_3J78_124 | No text annotation | ||
HL_3J78_110 | No text annotation | ||
HL_3J78_111 | GNRA | ||
HL_3J78_112 | Pseudoknot with intercalation | ||
HL_3J78_113 | No text annotation | ||
HL_3J78_114 | No text annotation | ||
HL_3J78_115 | No text annotation | ||
HL_3J78_125 | No text annotation | ||
HL_3J78_116 | No text annotation | ||
HL_3J78_117 | tRNA anticodon loop | ||
HL_3J78_118 | T-loop with 2 stacked bulged bases | ||
HL_3J78_119 | tRNA D-loop | ||
HL_3J78_120 | tRNA anticodon loop | ||
HL_3J78_121 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_3J78_001 | Single bulged C | ||
IL_3J78_002 | Isolated non-canonical cWW pair | ||
IL_3J78_003 | Triple sheared related | ||
IL_3J78_004 | No text annotation | ||
IL_3J78_005 | Minor groove platform | ||
IL_3J78_006 | No text annotation | ||
IL_3J78_007 | No text annotation | ||
IL_3J78_008 | Tandem non-canonical cWW pairs | ||
IL_3J78_009 | Multiple bulged bases | ||
IL_3J78_010 | No text annotation | ||
IL_3J78_011 | tWH-tWH-tHW-tHW | ||
IL_3J78_012 | Isolated non-canonical cWW contact | ||
IL_3J78_013 | Double sheared | ||
IL_3J78_014 | Major groove platform with extra cWW | ||
IL_3J78_015 | Isolated non-canonical cWW pair | ||
IL_3J78_016 | Single bulged A | ||
IL_3J78_017 | No text annotation | ||
IL_3J78_018 | Isolated non-canonical cWW pair | ||
IL_3J78_019 | Kink-turn with non-sequential stacking | ||
IL_3J78_020 | No text annotation | ||
IL_3J78_021 | No text annotation | ||
IL_3J78_022 | Isolated cWH basepair | ||
IL_3J78_023 | Isolated near basepair | ||
IL_3J78_024 | Single bulged U | ||
IL_3J78_025 | C-loop | ||
IL_3J78_026 | Single bulged G | ||
IL_3J78_027 | No text annotation | ||
IL_3J78_028 | Single stack bend | ||
IL_3J78_029 | Single stack bend | ||
IL_3J78_030 | SSU/LSU pseudoknot | ||
IL_3J78_031 | Single bulged U | ||
IL_3J78_032 | Kink-turn related | ||
IL_3J78_033 | No text annotation | ||
IL_3J78_034 | Isolated non-canonical cWW pair | ||
IL_3J78_035 | tSH-tHW-tHS | ||
IL_3J78_036 | No text annotation | ||
IL_3J78_037 | Major groove minor groove platform; mini C-loop | ||
IL_3J78_038 | Isolated non-canonical cWW pair | ||
IL_3J78_039 | No text annotation | ||
IL_3J78_040 | No text annotation | ||
IL_3J78_041 | Isolated cWH basepair | ||
IL_3J78_042 | Major groove platform; stack outside cWW | ||
IL_3J78_043 | Isolated non-canonical cWW pair | ||
IL_3J78_228 | Single bulged U | ||
IL_3J78_229 | Isolated non-canonical cWW pair | ||
IL_3J78_044 | Tandem non-canonical cWW pairs | ||
IL_3J78_045 | Tandem non-canonical cWW pairs | ||
IL_3J78_046 | Isolated non-canonical cWW pair | ||
IL_3J78_047 | Kink-turn related | ||
IL_3J78_048 | Other IL | ||
IL_3J78_049 | tSH-tHW-tHS | ||
IL_3J78_050 | No text annotation | ||
IL_3J78_230 | Tandem non-canonical cWW pairs | ||
IL_3J78_051 | No text annotation | ||
IL_3J78_052 | Single bulged U | ||
IL_3J78_053 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
IL_3J78_054 | Single bulged A | ||
IL_3J78_055 | Single bulged G | ||
IL_3J78_056 | C-loop | ||
IL_3J78_057 | Isolated non-canonical cWW pair | ||
IL_3J78_058 | Minor groove platform | ||
IL_3J78_059 | Isolated non-canonical cWW pair | ||
IL_3J78_060 | No text annotation | ||
IL_3J78_231 | Kink-turn | ||
IL_3J78_061 | No text annotation | ||
IL_3J78_232 | No text annotation | ||
IL_3J78_062 | No text annotation | ||
IL_3J78_063 | Single bulged U | ||
IL_3J78_064 | Isolated cWS basepair | ||
IL_3J78_233 | No text annotation | ||
IL_3J78_065 | Minor groove platform with extra cWW | ||
IL_3J78_066 | Single bulged A | ||
IL_3J78_067 | Isolated cWH basepair | ||
IL_3J78_068 | Minor groove platform | ||
IL_3J78_069 | Isolated non-canonical cWW pair | ||
IL_3J78_070 | Minor groove platform | ||
IL_3J78_234 | No text annotation | ||
IL_3J78_071 | No text annotation | ||
IL_3J78_072 | Major groove platform; stack outside cWW | ||
IL_3J78_251 | No text annotation | ||
IL_3J78_235 | No text annotation | ||
IL_3J78_073 | 180 degree turn | ||
IL_3J78_074 | Tandem non-canonical cWW pairs | ||
IL_3J78_075 | No text annotation | ||
IL_3J78_076 | No text annotation | ||
IL_3J78_077 | No text annotation | ||
IL_3J78_078 | Isolated non-canonical cWW pair | ||
IL_3J78_079 | No text annotation | ||
IL_3J78_080 | Isolated non-canonical cWW pair | ||
IL_3J78_081 | Double sheared | ||
IL_3J78_082 | No text annotation | ||
IL_3J78_083 | Isolated non-canonical cWW pair | ||
IL_3J78_084 | Double sheared | ||
IL_3J78_085 | Isolated non-canonical cWW pair | ||
IL_3J78_086 | Tandem non-canonical cWW pairs | ||
IL_3J78_087 | Triple sheared | ||
IL_3J78_088 | Not an internal loop | ||
IL_3J78_236 | No text annotation | ||
IL_3J78_089 | Single bulged C | ||
IL_3J78_090 | No text annotation | ||
IL_3J78_237 | No text annotation | ||
IL_3J78_252 | No text annotation | ||
IL_3J78_091 | No text annotation | ||
IL_3J78_092 | No text annotation | ||
IL_3J78_093 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_3J78_094 | No text annotation | ||
IL_3J78_095 | Isolated non-canonical cWW pair | ||
IL_3J78_096 | Single stack bend | ||
IL_3J78_097 | No text annotation | ||
IL_3J78_098 | No text annotation | ||
IL_3J78_253 | Major groove platform | ||
IL_3J78_238 | No text annotation | ||
IL_3J78_099 | Single bulged U | ||
IL_3J78_100 | Single bulged A | ||
IL_3J78_101 | No text annotation | ||
IL_3J78_102 | No text annotation | ||
IL_3J78_103 | Isolated non-canonical cWW pair | ||
IL_3J78_104 | No text annotation | ||
IL_3J78_105 | Single bulged A | ||
IL_3J78_239 | No text annotation | ||
IL_3J78_106 | No text annotation | ||
IL_3J78_107 | No text annotation | ||
IL_3J78_108 | Isolated non-canonical cWW pair | ||
IL_3J78_109 | No text annotation | ||
IL_3J78_110 | No text annotation | ||
IL_3J78_111 | Single bulged A | ||
IL_3J78_112 | Single bulged U | ||
IL_3J78_113 | No text annotation | ||
IL_3J78_114 | Isolated non-canonical cWW pair | ||
IL_3J78_115 | tHW-tHW cross-strand stack | ||
IL_3J78_116 | Single bulged G | ||
IL_3J78_117 | Triple sheared | ||
IL_3J78_118 | Major groove platform with extra cWW | ||
IL_3J78_119 | Single bulged U | ||
IL_3J78_120 | Multiple bulged bases | ||
IL_3J78_121 | Isolated non-canonical cWW pair | ||
IL_3J78_122 | No text annotation | ||
IL_3J78_123 | 180 degree turn | ||
IL_3J78_124 | Single bulged G | ||
IL_3J78_125 | No text annotation | ||
IL_3J78_126 | Minor groove platform | ||
IL_3J78_127 | C-loop | ||
IL_3J78_128 | Tandem non-canonical cWW pairs | ||
IL_3J78_129 | Isolated non-canonical cWW pair | ||
IL_3J78_240 | No text annotation | ||
IL_3J78_130 | No text annotation | ||
IL_3J78_241 | Isolated non-canonical cWW pair | ||
IL_3J78_131 | Tandem non-canonical cWW pairs | ||
IL_3J78_132 | Other IL | ||
IL_3J78_242 | Single bulged G | ||
IL_3J78_133 | Isolated non-canonical cWW pair | ||
IL_3J78_134 | UAA/GAN | ||
IL_3J78_135 | SSU/LSU pseudoknot | ||
IL_3J78_136 | Single bulged U | ||
IL_3J78_137 | No text annotation | ||
IL_3J78_138 | No text annotation | ||
IL_3J78_139 | Single bulged U | ||
IL_3J78_140 | Kink-turn | ||
IL_3J78_141 | No text annotation | ||
IL_3J78_142 | Major groove platform with extra cWW | ||
IL_3J78_143 | No text annotation | ||
IL_3J78_243 | No text annotation | ||
IL_3J78_144 | Single bulged A | ||
IL_3J78_145 | Kink-turn | ||
IL_3J78_146 | Single bulged A | ||
IL_3J78_147 | No text annotation | ||
IL_3J78_148 | No text annotation | ||
IL_3J78_244 | C-loop | ||
IL_3J78_149 | UAA/GAN | ||
IL_3J78_150 | No text annotation | ||
IL_3J78_254 | No text annotation | ||
IL_3J78_151 | No text annotation | ||
IL_3J78_255 | Major groove platform related | ||
IL_3J78_245 | No text annotation | ||
IL_3J78_152 | Multiple bulged bases with near cWW | ||
IL_3J78_153 | No text annotation | ||
IL_3J78_154 | Triple sheared | ||
IL_3J78_155 | Isolated non-canonical cWW pair | ||
IL_3J78_156 | Single bulged C | ||
IL_3J78_157 | Single stack bend | ||
IL_3J78_158 | No text annotation | ||
IL_3J78_159 | No text annotation | ||
IL_3J78_160 | Kink-turn | ||
IL_3J78_161 | No text annotation | ||
IL_3J78_162 | No text annotation | ||
IL_3J78_163 | Major groove platform; stack outside cWW | ||
IL_3J78_246 | No text annotation | ||
IL_3J78_164 | Intercalated tWH | ||
IL_3J78_165 | No text annotation | ||
IL_3J78_166 | Isolated non-canonical cWW pair | ||
IL_3J78_167 | No text annotation | ||
IL_3J78_247 | No text annotation | ||
IL_3J78_168 | Single bulged A | ||
IL_3J78_169 | Kink-turn related | ||
IL_3J78_170 | No text annotation | ||
IL_3J78_171 | Major groove intercalation | ||
IL_3J78_172 | No text annotation | ||
IL_3J78_173 | No text annotation | ||
IL_3J78_174 | Bulged stacked bases | ||
IL_3J78_175 | No text annotation | ||
IL_3J78_176 | No text annotation | ||
IL_3J78_177 | Major groove platform with intercalation | ||
IL_3J78_178 | Single bulged U | ||
IL_3J78_179 | Minor groove platform | ||
IL_3J78_180 | No text annotation | ||
IL_3J78_248 | No text annotation | ||
IL_3J78_181 | No text annotation | ||
IL_3J78_182 | Single bulged A | ||
IL_3J78_183 | No text annotation | ||
IL_3J78_184 | Tandem non-canonical cWW pairs | ||
IL_3J78_185 | Single stack bend | ||
IL_3J78_186 | No text annotation | ||
IL_3J78_249 | No text annotation | ||
IL_3J78_187 | Major groove platform | ||
IL_3J78_188 | Major groove minor groove platform with extra cWW | ||
IL_3J78_189 | No text annotation | ||
IL_3J78_190 | Major groove platform | ||
IL_3J78_191 | No text annotation | ||
IL_3J78_192 | No text annotation | ||
IL_3J78_193 | No text annotation | ||
IL_3J78_194 | Isolated non-canonical cWW pair | ||
IL_3J78_195 | Single bulged A | ||
IL_3J78_196 | Double sheared | ||
IL_3J78_197 | Isolated non-canonical cWW pair | ||
IL_3J78_198 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_3J78_199 | Major groove minor groove platform with tHH | ||
IL_3J78_200 | UAA/GAN related | ||
IL_3J78_201 | No text annotation | ||
IL_3J78_202 | UAA/GAN | ||
IL_3J78_203 | Tandem non-canonical cWW pairs | ||
IL_3J78_204 | Isolated non-canonical cWW pair | ||
IL_3J78_205 | Single bulged A | ||
IL_3J78_206 | No text annotation | ||
IL_3J78_207 | Single bulged U | ||
IL_3J78_250 | No text annotation | ||
IL_3J78_208 | No text annotation | ||
IL_3J78_209 | Isolated non-canonical cWW pair | ||
IL_3J78_210 | Tandem non-canonical cWW pairs | ||
IL_3J78_211 | Tandem non-canonical cWW pairs | ||
IL_3J78_212 | Single bulged U | ||
IL_3J78_213 | Single bulged U | ||
IL_3J78_214 | No text annotation | ||
IL_3J78_215 | No text annotation | ||
IL_3J78_216 | Single bulged U | ||
IL_3J78_217 | Double sheared; A in syn | ||
IL_3J78_218 | No text annotation | ||
IL_3J78_219 | Single bulged A | ||
IL_3J78_220 | Minor groove platform related | ||
IL_3J78_221 | Minor groove platform | ||
IL_3J78_222 | Single stack bend | ||
IL_3J78_223 | Symmetric double minor groove platform | ||
IL_3J78_224 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_3J78_225 | Isolated non-canonical cWW pair | ||
IL_3J78_226 | Isolated non-canonical cWW pair | ||
IL_3J78_227 | Single bulged U |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J5_3J78_003 | 1/1S/124:143, 1/1S/172:182, 1/1S/203:204, 1/1S/263:265, 1/1S/289:293 | No text annotation | ||
J5_3J78_004 | 1/1S/124:143, 1/1S/172:182, 1/1S/203:204, 1/1S/263:267, 1/1S/288:293 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_3J78_001 | No text annotation | ||
J3_3J78_032 | No text annotation | ||
J3_3J78_002 | No text annotation | ||
J3_3J78_033 | No text annotation | ||
J3_3J78_003 | No text annotation | ||
J3_3J78_004 | No text annotation | ||
J3_3J78_005 | No text annotation | ||
J3_3J78_006 | No text annotation | ||
J3_3J78_007 | No text annotation | ||
J3_3J78_008 | No text annotation | ||
J3_3J78_009 | No text annotation | ||
J3_3J78_010 | No text annotation | ||
J3_3J78_011 | No text annotation | ||
J3_3J78_012 | No text annotation | ||
J3_3J78_034 | No text annotation | ||
J3_3J78_013 | No text annotation | ||
J3_3J78_014 | No text annotation | ||
J3_3J78_035 | No text annotation | ||
J3_3J78_036 | No text annotation | ||
J3_3J78_015 | No text annotation | ||
J3_3J78_045 | No text annotation | ||
J3_3J78_037 | No text annotation | ||
J3_3J78_046 | No text annotation | ||
J3_3J78_038 | No text annotation | ||
J3_3J78_016 | No text annotation | ||
J3_3J78_017 | No text annotation | ||
J3_3J78_018 | No text annotation | ||
J3_3J78_019 | No text annotation | ||
J3_3J78_020 | No text annotation | ||
J3_3J78_021 | No text annotation | ||
J3_3J78_022 | No text annotation | ||
J3_3J78_023 | No text annotation | ||
J3_3J78_039 | No text annotation | ||
J3_3J78_024 | No text annotation | ||
J3_3J78_040 | No text annotation | ||
J3_3J78_041 | No text annotation | ||
J3_3J78_042 | No text annotation | ||
J3_3J78_025 | No text annotation | ||
J3_3J78_026 | No text annotation | ||
J3_3J78_043 | No text annotation | ||
J3_3J78_027 | No text annotation | ||
J3_3J78_028 | No text annotation | ||
J3_3J78_044 | No text annotation | ||
J3_3J78_029 | No text annotation | ||
J3_3J78_030 | No text annotation | ||
J3_3J78_031 | No text annotation | ||
J4_3J78_001 | No text annotation | ||
J4_3J78_002 | No text annotation | ||
J4_3J78_003 | No text annotation | ||
J4_3J78_004 | No text annotation | ||
J4_3J78_013 | No text annotation | ||
J4_3J78_005 | No text annotation | ||
J4_3J78_006 | No text annotation | ||
J4_3J78_007 | No text annotation | ||
J4_3J78_008 | No text annotation | ||
J4_3J78_009 | No text annotation | ||
J4_3J78_010 | No text annotation | ||
J4_3J78_011 | tRNA junction | ||
J4_3J78_012 | tRNA junction | ||
J5_3J78_001 | No text annotation | ||
J5_3J78_002 | No text annotation | ||
J5_3J78_005 | No text annotation | ||
J5_3J78_006 | No text annotation | ||
J5_3J78_007 | No text annotation | ||
J5_3J78_008 | No text annotation | ||
J5_3J78_009 | No text annotation | ||
J5_3J78_010 | No text annotation | ||
J5_3J78_011 | No text annotation | ||
J5_3J78_012 | No text annotation | ||
J6_3J78_003 | No text annotation | ||
J6_3J78_001 | No text annotation | ||
J6_3J78_002 | No text annotation | ||
J7_3J78_001 | No text annotation |
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