HL_3J78_013

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGGGCCCAUUCGGGUCUU

Length

18 nucleotides

Bulged bases

3J78|1|1S|U|494, 3J78|1|1S|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J78|1|1S|A|485
3J78|1|1S|G|486
3J78|1|1S|G|487
3J78|1|1S|G|488
3J78|1|1S|C|489
3J78|1|1S|C|490
3J78|1|1S|C|491
3J78|1|1S|A|492
3J78|1|1S|U|493
3J78|1|1S|U|494
3J78|1|1S|C|495
3J78|1|1S|G|496
3J78|1|1S|G|497
3J78|1|1S|G|498
3J78|1|1S|U|499
3J78|1|1S|C|500
3J78|1|1S|U|501
3J78|1|1S|U|502

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 30

40S ribosomal protein S30

Chain S9

40S ribosomal protein S9