HL_3J78_016

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGCCGGUCGGAUUUCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J78|1|1S|G|651
3J78|1|1S|G|652
3J78|1|1S|C|653
3J78|1|1S|C|654
3J78|1|1S|G|655
3J78|1|1S|G|656
3J78|1|1S|U|657
3J78|1|1S|C|658
3J78|1|1S|G|676
3J78|1|1S|G|677
3J78|1|1S|A|678
3J78|1|1S|U|679
3J78|1|1S|U|680
3J78|1|1S|U|681
3J78|1|1S|C|682
3J78|1|1S|C|683

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S9

40S ribosomal protein S9