3D structure

PDB id
3J78 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.3 Å

Loop

Sequence
GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC
Length
33 nucleotides
Bulged bases
3J78|1|1S|G|712, 3J78|1|1S|A|713, 3J78|1|1S|U|718, 3J78|1|1S|U|719, 3J78|1|1S|U|721, 3J78|1|1S|U|728, 3J78|1|1S|A|733
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J78|1|1S|G|703
3J78|1|1S|C|704
3J78|1|1S|U|705
3J78|1|1S|A|706
3J78|1|1S|A|707
3J78|1|1S|C|708
3J78|1|1S|C|709
3J78|1|1S|U|710
3J78|1|1S|U|711
3J78|1|1S|G|712
3J78|1|1S|A|713
3J78|1|1S|G|714
3J78|1|1S|U|715
3J78|1|1S|C|716
3J78|1|1S|C|717
3J78|1|1S|U|718
3J78|1|1S|U|719
3J78|1|1S|G|720
3J78|1|1S|U|721
3J78|1|1S|G|722
3J78|1|1S|G|723
3J78|1|1S|C|724
3J78|1|1S|U|725
3J78|1|1S|C|726
3J78|1|1S|U|727
3J78|1|1S|U|728
3J78|1|1S|G|729
3J78|1|1S|G|730
3J78|1|1S|C|731
3J78|1|1S|G|732
3J78|1|1S|A|733
3J78|1|1S|A|734
3J78|1|1S|C|735

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain S4
40S ribosomal protein S4
Chain S6
40S ribosomal protein S6

Coloring options:

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