HL_3J78_042

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

3J78|1|2S|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1678

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

3J78|1|2S|U|194
3J78|1|2S|U|195
3J78|1|2S|G|196
3J78|1|2S|G|197
3J78|1|2S|A|198
3J78|1|2S|A|199
3J78|1|2S|C|200
3J78|1|2S|A|201

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L26

Chain 82

60S ribosomal protein L32