HL_3J78_046
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 3J78|1|2S|G|304, 3J78|1|2S|U|305
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_046 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.2271
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3J78|1|2S|G|303
3J78|1|2S|G|304
3J78|1|2S|U|305
3J78|1|2S|A|306
3J78|1|2S|A|307
3J78|1|2S|A|308
3J78|1|2S|U|309
3J78|1|2S|U|310
3J78|1|2S|C|311
3J78|1|2S|C|312
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L15
- Chain 78
- 60S ribosomal protein L28
- Chain 86
- 60S ribosomal protein L36
- Chain 92
- 60S ribosomal protein L42
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