HL_3J78_060

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

3J78|1|2S|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_060 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4438

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J78|1|2S|C|1023
3J78|1|2S|G|1024
3J78|1|2S|A|1025
3J78|1|2S|A|1026
3J78|1|2S|A|1027
3J78|1|2S|U|1028
3J78|1|2S|G|1029

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 15

40S ribosomal protein S15

Chain 18

40S ribosomal protein S18

Chain 61

60S ribosomal protein L11