HL_3J78_067

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_067 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.2204

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J78|1|2S|C|1403
3J78|1|2S|G|1404
3J78|1|2S|U|1405
3J78|1|2S|A|1406
3J78|1|2S|A|1407
3J78|1|2S|G|1408

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 82

60S ribosomal protein L32