HL_3J78_072

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

3J78|1|2S|A|1602, 3J78|1|2S|U|1606, 3J78|1|2S|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_072 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.2004

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J78|1|2S|G|1599
3J78|1|2S|U|1600
3J78|1|2S|U|1601
3J78|1|2S|A|1602
3J78|1|2S|A|1603
3J78|1|2S|G|1604
3J78|1|2S|A|1605
3J78|1|2S|U|1606
3J78|1|2S|U|1607
3J78|1|2S|C|1608

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19

Chain 75

60S ribosomal protein L25

Chain 84

60S ribosomal protein L34