HL_3J78_077

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

3J78|1|2S|C|1793, 3J78|1|2S|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_077 not in the Motif Atlas

Homologous match to HL_5TBW_040

Geometric discrepancy: 0.2129

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

3J78|1|2S|C|1792
3J78|1|2S|C|1793
3J78|1|2S|G|1794
3J78|1|2S|U|1795
3J78|1|2S|G|1796

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 93

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2