HL_3J78_081

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCUUGGUCAGACGCAGCGGGCCUUGUUGUAGACGG

Length

35 nucleotides

Bulged bases

3J78|1|2S|U|1967, 3J78|1|2S|G|1968, 3J78|1|2S|C|1980, 3J78|1|2S|G|2037

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J78|1|2S|C|1964
3J78|1|2S|C|1965
3J78|1|2S|U|1966
3J78|1|2S|U|1967
3J78|1|2S|G|1968
3J78|1|2S|G|1969
3J78|1|2S|U|1970
3J78|1|2S|C|1971
3J78|1|2S|A|1972
3J78|1|2S|G|1973
3J78|1|2S|A|1974
3J78|1|2S|C|1975
3J78|1|2S|G|1976
3J78|1|2S|C|1977
3J78|1|2S|A|1978
3J78|1|2S|G|1979
3J78|1|2S|C|1980
3J78|1|2S|G|1981
3J78|1|2S|G|1982
3J78|1|2S|G|2037
3J78|1|2S|C|2038
3J78|1|2S|C|2039
3J78|1|2S|U|2040
3J78|1|2S|U|2041
3J78|1|2S|G|2042
3J78|1|2S|U|2043
3J78|1|2S|U|2044
3J78|1|2S|G|2045
3J78|1|2S|U|2046
3J78|1|2S|A|2047
3J78|1|2S|G|2048
3J78|1|2S|A|2049
3J78|1|2S|C|2050
3J78|1|2S|G|2051
3J78|1|2S|G|2052

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 88

60S ribosomal protein L38