HL_3J78_088

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

3J78|1|2S|A|2372, 3J78|1|2S|A|2373, 3J78|1|2S|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_088 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.22

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3J78|1|2S|G|2369
3J78|1|2S|G|2370
3J78|1|2S|G|2371
3J78|1|2S|A|2372
3J78|1|2S|A|2373
3J78|1|2S|C|2374
3J78|1|2S|G|2375
3J78|1|2S|G|2376
3J78|1|2S|G|2377
3J78|1|2S|C|2378

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L16

Chain 82

60S ribosomal protein L32

Chain L3

60S ribosomal protein L3