HL_3J78_089

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

3J78|1|2S|U|2472

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_089 not in the Motif Atlas

Homologous match to HL_8C3A_052

Geometric discrepancy: 0.4923

The information below is about HL_8C3A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70228.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

3J78|1|2S|G|2469
3J78|1|2S|C|2470
3J78|1|2S|U|2471
3J78|1|2S|U|2472
3J78|1|2S|C|2473
3J78|1|2S|G|2474
3J78|1|2S|G|2475
3J78|1|2S|C|2476

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L1

60S ribosomal protein L1