HL_3J78_094

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_094 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2163

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3J78|1|2S|A|2673
3J78|1|2S|A|2674
3J78|1|2S|C|2675
3J78|1|2S|A|2676
3J78|1|2S|G|2677
3J78|1|2S|A|2678
3J78|1|2S|A|2679
3J78|1|2S|A|2680
3J78|1|2S|U|2681

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 61

60S ribosomal protein L11