HL_3J78_095

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_095 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.131

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

3J78|1|2S|C|2693
3J78|1|2S|A|2694
3J78|1|2S|A|2695
3J78|1|2S|A|2696
3J78|1|2S|A|2697
3J78|1|2S|G|2698
3J78|1|2S|G|2699
3J78|1|2S|G|2700

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 60

60S ribosomal protein L10

Chain 71

60S ribosomal protein L21

Chain PT

Transfer RNA; tRNA