HL_3J78_101

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_101 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.2108

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3J78|1|2S|U|2920
3J78|1|2S|U|2921
3J78|1|2S|G|2922
3J78|1|2S|U|2923
3J78|1|2S|U|2924
3J78|1|2S|C|2925
3J78|1|2S|A|2926

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3