HL_3J78_103

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_103 not in the Motif Atlas

Geometric match to HL_3PDR_001

Geometric discrepancy: 0.1953

The information below is about HL_3PDR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3J78|1|2S|C|3025
3J78|1|2S|G|3026
3J78|1|2S|A|3027
3J78|1|2S|G|3028
3J78|1|2S|A|3029
3J78|1|2S|G|3030

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 90

60S ribosomal protein L40

Chain L9

60S ribosomal protein L9