HL_3J78_107

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_107 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.2201

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J78|1|2S|C|3240
3J78|1|2S|G|3241
3J78|1|2S|G|3242
3J78|1|2S|A|3243
3J78|1|2S|A|3244
3J78|1|2S|A|3245
3J78|1|2S|G|3246
3J78|1|2S|G|3247

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L16

Chain L3

60S ribosomal protein L3