HL_3J78_108

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

3J78|1|2S|U|3304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_108 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.2251

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

3J78|1|2S|G|3303
3J78|1|2S|U|3304
3J78|1|2S|A|3305
3J78|1|2S|U|3306
3J78|1|2S|A|3307
3J78|1|2S|C|3308
3J78|1|2S|G|3309
3J78|1|2S|A|3310
3J78|1|2S|C|3311

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain 81

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3