HL_3J78_121

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_121 not in the Motif Atlas

Homologous match to HL_5WWT_002

Geometric discrepancy: 0.2112

The information below is about HL_5WWT_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

3J78|1|PT|G|54
3J78|1|PT|U|55
3J78|1|PT|U|56
3J78|1|PT|C|57
3J78|1|PT|A|58
3J78|1|PT|A|59
3J78|1|PT|A|60
3J78|1|PT|U|61
3J78|1|PT|C|62

Current chains

Chain PT

P/E-site initiator transfer RNAfMet

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 61

60S ribosomal protein L11

Chain 92

60S ribosomal protein L42