HL_3J79_014

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUUUUCU

Length

8 nucleotides

Bulged bases

3J79|1|A|U|668, 3J79|1|A|C|669

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04673.1

Basepair signature

cWW-R-R-R

Number of instances in this motif group

2

Unit IDs

3J79|1|A|A|663
3J79|1|A|U|664
3J79|1|A|U|665
3J79|1|A|U|666
3J79|1|A|U|667
3J79|1|A|U|668
3J79|1|A|C|669
3J79|1|A|U|670

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein uL30

Chain F

60S ribosomal protein uL4

Chain I

60S ribosomal protein eL6