RNA 3D Hub //

3J79 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J79_0011/A/38:45No text annotation
geometric
HL_5TBW_001
NA
HL_3J79_0021/A/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_3J79_0031/A/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_3J79_0041/A/135:142No text annotation
HL_3J79_0051/A/202:209T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_3J79_0061/A/216:220No text annotation
homologous
HL_8C3A_006
NA
HL_3J79_0071/A/224:232T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_3J79_0081/A/285:294T-loop related
homologous
HL_8P9A_120
HL_77436.5
HL_3J79_0091/A/311:320Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_3J79_0101/A/365:370GNRA
homologous
HL_8C3A_010
NA
HL_3J79_0111/A/391:396GNRA
homologous
HL_5TBW_011
NA
HL_3J79_0751/A/591:600No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_3J79_0131/A/594:599No text annotation
HL_3J79_0141/A/663:670No text annotation
HL_3J79_0151/A/718:727T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_3J79_0161/A/764:775No text annotation
homologous
HL_5TBW_015
NA
HL_3J79_0171/A/801:806GNRA
homologous
HL_8C3A_016
NA
HL_3J79_0201/A/963:968GNRA
homologous
HL_5TBW_019
NA
HL_3J79_0211/A/995:1004No text annotation
homologous
HL_5TBW_020
NA
HL_3J79_0221/A/1029:1037No text annotation
homologous
HL_5TBW_021
NA
HL_3J79_0231/A/1077:1082Externally structured
homologous
HL_5TBW_022
NA
HL_3J79_0241/A/1200:1208No text annotation
homologous
HL_5TBW_024
NA
HL_3J79_0251/A/1254:1260GNRA
homologous
HL_8C3A_025
NA
HL_3J79_0261/A/1276:1283No text annotation
homologous
HL_8C3A_026
NA
HL_3J79_0291/A/1551:1556GNRA
homologous
HL_8C3A_030
NA
HL_3J79_0301/A/1611:1619T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_3J79_0311/A/1654:1662No text annotation
geometric
HL_7A0S_041
NA
HL_3J79_0321/A/1693:1698GNRA variation
homologous
HL_5TBW_033
NA
HL_3J79_0341/A/1742:1751No text annotation
homologous
HL_8C3A_035
NA
HL_3J79_0351/A/1783:1788GNRA
geometric
HL_5TBW_036
NA
HL_3J79_0361/A/1835:1843No text annotation
homologous
HL_5TBW_037
NA
HL_3J79_0371/A/1876:1882Other HL
geometric
HL_4V9F_039
HL_77436.5
HL_3J79_0401/A/2014:2018Mini UNCG
homologous
HL_5TBW_040
NA
HL_3J79_0411/A/2111:2118No text annotation
homologous
HL_5TBW_041
NA
HL_3J79_0421/A/2129:2135GNRA
homologous
HL_8C3A_042
NA
HL_3J79_0431/A/2191:2196UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_3J79_0451/A/2403:2407No text annotation
homologous
HL_8C3A_045
NA
HL_3J79_0461/A/2428:2438No text annotation
homologous
HL_5TBW_046
NA
HL_3J79_0471/A/2458:2463GNRA
homologous
HL_8C3A_047
NA
HL_3J79_0481/A/2512:2519No text annotation
geometric
HL_4WF9_041
NA
HL_3J79_0491/A/2546:2556No text annotation
homologous
HL_5TBW_049
NA
HL_3J79_0501/A/2585:2593No text annotation
homologous
HL_5TBW_050
NA
HL_3J79_0511/A/2662:2671No text annotation
homologous
HL_5TBW_051
NA
HL_3J79_0541/A/2955:2963No text annotation
homologous
HL_5TBW_054
NA
HL_3J79_0551/A/2972:2984No text annotation
homologous
HL_8C3A_056
NA
HL_3J79_0561/A/3012:3020No text annotation
homologous
HL_5TBW_056
NA
HL_3J79_0571/A/3032:3039Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_3J79_0581/A/3063:3071No text annotation
homologous
HL_8C3A_059
NA
HL_3J79_0591/A/3083:3088GNRA
homologous
HL_8C3A_060
NA
HL_3J79_0601/A/3127:3133No text annotation
geometric
HL_7A0S_023
HL_53890.2
HL_3J79_0611/A/3199:3207No text annotation
homologous
HL_5TBW_061
NA
HL_3J79_0621/A/3256:3263No text annotation
homologous
HL_5TBW_062
NA
HL_3J79_0631/A/3279:3285No text annotation
geometric
HL_5TBW_063
NA
HL_3J79_0641/A/3322:3327GNRA
homologous
HL_5TBW_064
NA
HL_3J79_0651/A/3411:3416GNRA
geometric
HL_5J7L_197
HL_37824.7
HL_3J79_0661/A/3453:3458Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_3J79_0671/A/3494:3509No text annotation
homologous
HL_8C3A_068
NA
HL_3J79_0681/A/3697:3705No text annotation
homologous
HL_8C3A_071
NA
HL_3J79_0771/B/32:45No text annotation
homologous
HL_4V9F_074
HL_97756.2
HL_3J79_0701/B/36:41No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_3J79_0711/B/86:91GNRA
homologous
HL_5TBW_186
NA
HL_3J79_0781/C/51:60Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_3J79_0721/C/77:82GNRA variation
homologous
HL_5TBW_074
NA
HL_3J79_0731/C/111:117No text annotation
homologous
HL_5TBW_075
NA

Problematic loops

#loop idProblemSequence
HL_3J79_012No text annotation
HL_3J79_018No text annotation
HL_3J79_019UNCG variation
HL_3J79_076GNRA with near cWW
HL_3J79_027No text annotation
HL_3J79_028No text annotation
HL_3J79_033No text annotation
HL_3J79_038No text annotation
HL_3J79_039No text annotation
HL_3J79_044No text annotation
HL_3J79_052No text annotation
HL_3J79_053No text annotation
HL_3J79_069No text annotation
HL_3J79_074No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J79_0011/A/13:15,
1/C/151:152		Single bulged U
homologous
IL_8C3A_003
NA
IL_3J79_0021/A/27:28,
1/A/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_3J79_0031/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_3J79_0041/A/82:89,
1/A/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_3J79_0051/A/118:124,
1/A/153:159		No text annotation
IL_3J79_0061/A/126:128,
1/A/149:151		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_3J79_1501/A/130:134,
1/A/143:147		Triple non-canonical cWW pairs
geometric
IL_8VMB_003
IL_49751.4
IL_3J79_0081/A/165:168,
1/A/263:266		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_77658.1
IL_3J79_1401/A/173:175,
1/A/255:258		No text annotation
geometric
IL_8C3A_070
NA
IL_3J79_0101/A/178:183,
1/A/248:252		No text annotation
IL_3J79_0111/A/186:191,
1/A/240:245		No text annotation
geometric
IL_6O5F_001
NA
IL_3J79_1411/A/186:193,
1/A/238:245		No text annotation
IL_3J79_0121/A/197:199,
1/A/212:213		Single bulged U
homologous
IL_8C3A_013
NA
IL_3J79_0131/A/345:347,
1/C/29:30		Single bulged A
homologous
IL_5TBW_013
NA
IL_3J79_0141/A/385:388,
1/A/399:413		No text annotation
IL_3J79_0151/A/414:420,
1/C/17:23		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_3J79_0161/A/436:438,
1/A/709:711		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_87907.2
IL_3J79_1421/A/444:446,
1/A/701:703		Isolated cWH basepair
geometric
IL_3D0M_001
IL_10167.6
IL_3J79_0171/A/519:522,
1/A/633:636		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_77658.1
IL_3J79_1511/A/523:526,
1/A/629:632		No text annotation
geometric
IL_8P9A_380
IL_77658.1
IL_3J79_0191/A/529:533,
1/A/619:626		No text annotation
IL_3J79_0201/A/584:586,
1/A/605:606		Single bulged C
geometric
IL_5F5H_001
IL_61258.15
IL_3J79_0211/A/591:594,
1/A/599:600		Multiple bulged bases
geometric
IL_7Q80_001
IL_84476.1
IL_3J79_0221/A/658:661,
1/A/672:675		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_77658.1
IL_3J79_0231/A/743:745,
1/A/914:916		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
IL_87907.2
IL_3J79_0251/A/827:833,
1/A/861:868		No text annotation
IL_3J79_0261/A/875:876,
1/A/898:900		Single bulged A
homologous
IL_5TBW_024
NA
IL_3J79_0271/A/880:881,
1/A/892:894		Single bulged U
geometric
IL_4WF9_088
IL_89505.4
IL_3J79_0281/A/922:924,
1/A/1057:1059		Isolated non-canonical cWW pair
homologous
IL_5TBW_027
NA
IL_3J79_0291/A/924:928,
1/A/1050:1057		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_3J79_0301/A/947:948,
1/A/1014:1016		Single bulged A
geometric
IL_7A0S_016
IL_31462.6
IL_3J79_0311/A/952:953,
1/A/978:980		Single bulged G
homologous
IL_8C3A_032
NA
IL_3J79_0321/A/953:957,
1/A/974:978		Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_3J79_0331/A/988:991,
1/A/1007:1009		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_3J79_0341/A/992:994,
1/A/1005:1006		Single bulged U
homologous
IL_8C3A_035
NA
IL_3J79_0351/A/1026:1028,
1/A/1038:1042		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_3J79_0361/A/1088:1089,
1/A/1239:1241		Single stack bend
homologous
IL_5TBW_035
NA
IL_3J79_0371/A/1095:1104,
1/A/1228:1233		No text annotation
IL_3J79_0381/A/1105:1107,
1/A/1226:1227		Single bulged G
homologous
IL_8C3A_040
NA
IL_3J79_0391/A/1113:1119,
1/A/1175:1181		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_3J79_0401/A/1119:1120,
1/A/1173:1175		Minor groove platform
homologous
IL_8C3A_042
NA
IL_3J79_0411/A/1121:1126,
1/A/1169:1172		C-loop
homologous
IL_5TBW_040
NA
IL_3J79_0421/A/1128:1131,
1/A/1164:1167		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_3J79_0431/A/1131:1133,
1/A/1162:1164		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_3J79_0451/A/1191:1193,
1/A/1214:1216		Isolated non-canonical cWW pair
homologous
IL_5TBW_044
NA
IL_3J79_0461/A/1198:1200,
1/A/1208:1209		Single bulged A
geometric
IL_5TBW_045
NA
IL_3J79_0471/A/1248:1250,
1/A/1264:1266		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_3J79_0481/A/1294:1299,
1/A/1456:1461		UAA/GAN with extra cWW
geometric
IL_4WF9_104
IL_49767.8
IL_3J79_0491/A/1301:1308,
1/A/1453:1454		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_3J79_0501/A/1308:1310,
1/A/1452:1453		Single bulged U
homologous
IL_8C3A_053
NA
IL_3J79_0511/A/1315:1322,
1/A/1442:1447		No text annotation
geometric
IL_5TBW_051
NA
IL_3J79_0521/A/1322:1333,
1/A/1427:1442		No text annotation
geometric
IL_5TBW_052
NA
IL_3J79_0531/A/1335:1337,
1/A/1424:1425		Single bulged U
homologous
IL_5TBW_053
NA
IL_3J79_0551/A/1525:1527,
1/A/1577:1580		No text annotation
homologous
IL_8C3A_061
NA
IL_3J79_0561/A/1530:1534,
1/A/1569:1574		No text annotation
IL_3J79_0571/A/1536:1543,
1/A/1563:1567		Kink-turn
homologous
IL_5TBW_059
NA
IL_3J79_0581/A/1548:1550,
1/A/1557:1558		Single bulged U
geometric
IL_5J7L_334
IL_89505.4
IL_3J79_0591/A/1593:1599,
1/A/2647:2652		No text annotation
homologous
IL_8C3A_065
NA
IL_3J79_1441/A/1650:1654,
1/A/1662:1664		C-loop
homologous
IL_8C3A_482
NA
IL_3J79_0611/A/1681:1685,
1/A/1728:1733		UAA/GAN
homologous
IL_5TBW_063
NA
IL_3J79_1451/A/1759:1762,
1/A/2090:2095		No text annotation
IL_3J79_0631/A/1768:1770,
1/A/2082:2084		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_3J79_0641/A/1800:1804,
1/A/2028:2032		Triple sheared
homologous
IL_8C3A_073
NA
IL_3J79_0651/A/1816:1818,
1/A/2008:2010		Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_3J79_1461/A/1821:1823,
1/A/2003:2005		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_3J79_0661/A/1823:1824,
1/A/2001:2003		Major groove platform
geometric
IL_7A0S_088
IL_07039.3
IL_3J79_0671/A/1826:1829,
1/A/1996:1999		Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_3J79_0681/A/1849:1853,
1/A/1967:1972		No text annotation
geometric
IL_5TBW_071
NA
IL_3J79_0691/A/1861:1863,
1/A/1895:1897		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_87907.2
IL_3J79_0701/A/1868:1874,
1/A/1884:1890		No text annotation
homologous
IL_8C3A_079
NA
IL_3J79_0711/A/1906:1910,
1/A/1959:1963		No text annotation
IL_3J79_1521/A/1907:1911,
1/A/1958:1962		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_49751.4
IL_3J79_1531/A/1976:1978,
1/A/1990:1992		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_3J79_0721/A/2036:2040,
1/A/2069:2073		No text annotation
geometric
IL_5TBW_121
NA
IL_3J79_0731/A/2151:2156,
1/A/2640:2642		No text annotation
geometric
IL_5J7L_304
IL_12566.4
IL_3J79_0741/A/2163:2165,
1/A/2631:2633		No text annotation
homologous
IL_8C3A_081
NA
IL_3J79_0751/A/2166:2169,
1/A/2629:2630		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_3J79_1481/A/2166:2174,
1/A/2626:2630		No text annotation
homologous
IL_8C3A_484
NA
IL_3J79_0761/A/2169:2174,
1/A/2626:2629		No text annotation
homologous
IL_8C3A_083
NA
IL_3J79_0771/A/2186:2191,
1/A/2196:2202		No text annotation
homologous
IL_8C3A_084
NA
IL_3J79_0781/A/2208:2210,
1/A/2399:2401		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_3J79_0791/A/2215:2216,
1/A/2391:2394		No text annotation
homologous
IL_8C3A_086
NA
IL_3J79_0801/A/2421:2422,
1/A/2616:2618		Single bulged A
homologous
IL_5TBW_082
NA
IL_3J79_0811/A/2449:2455,
1/A/2466:2473		Kink-turn related
homologous
IL_5TBW_083
NA
IL_3J79_0821/A/2489:2492,
1/A/2538:2539		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_3J79_0831/A/2493:2494,
1/A/2534:2537		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_3J79_0841/A/2497:2503,
1/A/2528:2531		No text annotation
IL_3J79_0851/A/2504:2509,
1/A/2522:2527		No text annotation
IL_3J79_0861/A/2569:2570,
1/A/2600:2603		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_3J79_0871/A/2570:2581,
1/A/2597:2600		No text annotation
geometric
IL_5TBW_090
NA
IL_3J79_0881/A/2684:2687,
1/A/3345:3347		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_3J79_0891/A/2689:2691,
1/A/3340:3343		No text annotation
homologous
IL_8C3A_097
NA
IL_3J79_0901/A/2702:2704,
1/A/3170:3171		Single bulged U
homologous
IL_8C3A_098
NA
IL_3J79_0911/A/2705:2706,
1/A/3166:3169		Minor groove platform
homologous
IL_5TBW_094
NA
IL_3J79_0921/A/2716:2718,
1/A/2943:2946		No text annotation
homologous
IL_8C3A_100
NA
IL_3J79_0931/A/2738:2739,
1/A/2809:2811		No text annotation
IL_3J79_0951/A/2953:2954,
1/A/2964:2966		Single bulged A
homologous
IL_5TBW_098
NA
IL_3J79_0961/A/3005:3007,
1/A/3025:3029		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_3J79_0971/A/3109:3113,
1/A/3145:3147		No text annotation
geometric
IL_4V84_070
NA
IL_3J79_0981/A/3115:3124,
1/A/3136:3143		No text annotation
IL_3J79_0991/A/3182:3183,
1/A/3224:3226		Major groove platform
homologous
IL_5TBW_102
NA
IL_3J79_1001/A/3183:3185,
1/A/3222:3224		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_3J79_1011/A/3185:3187,
1/A/3221:3222		Major groove platform
homologous
IL_5TBW_104
NA
IL_3J79_1021/A/3187:3189,
1/A/3217:3221		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_3J79_1031/A/3194:3198,
1/A/3208:3212		No text annotation
homologous
IL_8C3A_114
NA
IL_3J79_1041/A/3235:3236,
1/A/3308:3310		Major groove platform
homologous
IL_5TBW_107
NA
IL_3J79_1051/A/3238:3240,
1/A/3302:3306		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_3J79_1061/A/3240:3241,
1/A/3299:3302		Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_3J79_1071/A/3250:3251,
1/A/3268:3271		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_3J79_1081/A/3277:3279,
1/A/3285:3287		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_3J79_1091/A/3319:3320,
1/A/3329:3331		Single bulged A
homologous
IL_5TBW_113
NA
IL_3J79_1101/A/3360:3362,
1/A/3376:3379		No text annotation
IL_3J79_1111/A/3390:3393,
1/A/3524:3530		Double sheared
homologous
IL_8C3A_123
NA
IL_3J79_1121/A/3398:3400,
1/A/3426:3428		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_3J79_1131/A/3405:3411,
1/A/3416:3421		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_019
IL_16458.4
IL_3J79_1141/A/3433:3437,
1/A/3476:3478		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_3J79_1151/A/3440:3444,
1/A/3469:3473		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_3J79_1161/A/3448:3449,
1/A/3462:3465		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_3J79_1171/A/3486:3491,
1/A/3512:3517		UAA/GAN with extra cWW
geometric
IL_7RQB_107
NA
IL_3J79_1191/A/3580:3582,
1/A/3620:3621		Single bulged A
geometric
IL_4R4V_004
IL_31462.6
IL_3J79_1201/A/3583:3591,
1/A/3613:3619		No text annotation
IL_3J79_1491/A/3628:3632,
1/A/3653:3658		No text annotation
IL_3J79_1221/A/3694:3697,
1/A/3705:3708		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_3J79_1231/A/3714:3716,
1/A/3775:3777		Isolated non-canonical cWW pair
geometric
IL_6E7L_001
IL_28037.2
IL_3J79_1241/A/3716:3717,
1/A/3773:3775		Single bulged A
geometric
IL_4V88_452
NA
IL_3J79_1541/A/3720:3722,
1/A/3765:3770		No text annotation
homologous
IL_8P9A_359
IL_43622.1
IL_3J79_1261/A/3724:3729,
1/A/3759:3763		No text annotation
homologous
IL_5TBW_133
NA
IL_3J79_1271/A/3731:3733,
1/A/3756:3757		Single bulged U
geometric
IL_3MEI_001
IL_89505.4
IL_3J79_1281/A/3734:3737,
1/A/3752:3755		Double sheared; A in syn
homologous
IL_5TBW_135
NA
IL_3J79_1291/B/15:16,
1/B/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_3J79_1301/B/21:27,
1/B/52:57		No text annotation
IL_3J79_1311/B/28:29,
1/B/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_3J79_1321/B/32:36,
1/B/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_3J79_1331/B/71:78,
1/B/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_3J79_1341/B/82:85,
1/B/92:94		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_3J79_1351/C/48:68,
1/C/99:103		No text annotation
geometric
IL_5TBW_144
NA
IL_3J79_1361/C/68:70,
1/C/96:99		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_3J79_1381/C/122:123,
1/C/138:141		No text annotation

Problematic loops

#loop idProblemSequence
IL_3J79_139No text annotation
IL_3J79_007Tandem non-canonical cWW pairs with near WC pairs
IL_3J79_009No text annotation
IL_3J79_018Triple non-canonical cWW pairs
IL_3J79_024No text annotation
IL_3J79_044Other IL
IL_3J79_143No text annotation
IL_3J79_054No text annotation
IL_3J79_060No text annotation
IL_3J79_062No text annotation
IL_3J79_147No text annotation
IL_3J79_094No text annotation
IL_3J79_118Multiple bulged bases
IL_3J79_121No text annotation
IL_3J79_125Tandem non-canonical cWW pairs
IL_3J79_137No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J79_0011/A/113:117,
1/A/160:163,
1/A/268:274		No text annotation
J3_3J79_0221/A/193:197,
1/A/213:222,
1/A/234:238		No text annotation
geometric
J3_8VTW_041
NA
J3_3J79_0231/A/348:364,
1/A/371:376,
1/C/25:28		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_3J79_0021/A/377:385,
1/A/413:414,
1/C/23:24		No text annotation
homologous
J3_5TBW_002
NA
J3_3J79_0241/A/377:388,
1/A/399:414,
1/C/23:24		No text annotation
J3_3J79_0031/A/446:454,
1/A/501:506,
1/A/692:701		No text annotation
J3_3J79_0041/A/512:514,
1/A/641:653,
1/A/680:686		No text annotation
J3_3J79_0051/A/540:548,
1/A/580:582,
1/A/608:612		No text annotation
J3_3J79_0061/A/933:939,
1/A/1024:1026,
1/A/1042:1045		No text annotation
homologous
J3_8C3A_003
NA
J3_3J79_0071/A/948:950,
1/A/982:987,
1/A/1010:1014		No text annotation
J3_3J79_0081/A/1108:1109,
1/A/1185:1189,
1/A/1218:1225		No text annotation
J3_3J79_0091/A/1628:1634,
1/A/2124:2126,
1/A/2138:2141		No text annotation
homologous
J3_5TBW_008
NA
J3_3J79_0101/A/1637:1640,
1/A/2104:2110,
1/A/2119:2121		No text annotation
homologous
J3_8C3A_007
NA
J3_3J79_0111/A/1675:1680,
1/A/1734:1738,
1/A/1755:1756		No text annotation
homologous
J3_5TBW_010
NA
J3_3J79_0141/A/1780:1781,
1/A/1790:1800,
1/A/2032:2033		No text annotation
J3_3J79_0251/A/1809:1813,
1/A/2013:2014,
1/A/2018:2023		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_3J79_0151/A/1854:1860,
1/A/1898:1905,
1/A/1964:1966		No text annotation
J3_3J79_0161/A/2725:2728,
1/A/2821:2825,
1/A/2930:2936		No text annotation
geometric
J3_4V9F_007
J3_97609.1
J3_3J79_0171/A/2990:2992,
1/A/3093:3104,
1/A/3152:3157		No text annotation
homologous
J3_8C3A_056
NA
J3_3J79_0181/A/3003:3005,
1/A/3029:3031,
1/A/3040:3045		No text annotation
homologous
J3_5TBW_013
NA
J3_3J79_0191/A/3245:3248,
1/A/3273:3275,
1/A/3289:3295		No text annotation
homologous
J3_5TBW_014
NA
J3_3J79_0261/A/3575:3580,
1/A/3621:3628,
1/A/3658:3672		No text annotation
J3_3J79_0201/A/3691:3693,
1/A/3709:3712,
1/A/3779:3783		No text annotation
J3_3J79_0211/B/9:14,
1/B/65:66,
1/B/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_3J79_0271/C/48:49,
1/C/62:68,
1/C/99:103		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J4_3J79_0011/A/112:113,
1/A/274:279,
1/A/300:307,
1/A/324:327		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_3J79_0021/A/193:197,
1/A/213:216,
1/A/220:222,
1/A/234:238		No text annotation
J4_3J79_0031/A/1600:1606,
1/A/1624:1625,
1/A/2144:2148,
1/A/2645:2646		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_3J79_0041/A/1641:1645,
1/A/1669:1674,
1/A/1757:1758,
1/A/2096:2103		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_3J79_0101/A/1829:1830,
1/A/1848:1849,
1/A/1972:1976,
1/A/1992:1996		No text annotation
J4_3J79_0061/A/2423:2427,
1/A/2439:2443,
1/A/2479:2483,
1/A/2610:2615		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_3J79_0071/A/2485:2487,
1/A/2541:2542,
1/A/2560:2569,
1/A/2603:2608		No text annotation
homologous
J4_8C3A_007
NA
J4_3J79_0081/A/2993:2997,
1/A/3051:3055,
1/A/3079:3081,
1/A/3090:3092		No text annotation
homologous
J4_8C3A_008
NA
J4_3J79_0111/A/3396:3398,
1/A/3428:3429,
1/A/3482:3484,
1/A/3519:3521		No text annotation
homologous
J4_8CRE_009
J4_65356.1
J5_3J79_0011/A/20:22,
1/C/39:46,
1/C/105:110,
1/C/118:119,
1/C/144:146		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_3J79_0021/A/736:741,
1/A/918:921,
1/A/1060:1063,
1/A/1524:1525,
1/A/1580:1586		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_3J79_0031/A/2174:2182,
1/A/2206:2207,
1/A/2402:2403,
1/A/2407:2415,
1/A/2624:2626		No text annotation
homologous
J5_8C3A_004
NA
J5_3J79_0041/A/2692:2699,
1/A/3174:3182,
1/A/3226:3235,
1/A/3310:3316,
1/A/3334:3339		No text annotation
J5_3J79_0051/A/2709:2712,
1/A/2950:2953,
1/A/2966:2967,
1/A/2989:2990,
1/A/3157:3163		No text annotation
homologous
J5_8C3A_006
NA
J6_3J79_0011/A/23:27,
1/A/58:68,
1/A/75:79,
1/A/106:110,
1/A/329:338,
1/C/37:38		No text annotation
J6_3J79_0021/A/2709:2712,
1/A/2950:2953,
1/A/2966:2967,
1/A/2989:2992,
1/A/3093:3104,
1/A/3152:3163		No text annotation
J7_3J79_0011/A/1068:1074,
1/A/1085:1087,
1/A/1242:1245,
1/A/1269:1274,
1/A/1285:1289,
1/A/1466:1467,
1/A/1514:1519		No text annotation

Problematic loops

#loop idProblemSequence
J3_3J79_012No text annotation
J3_3J79_013No text annotation
J4_3J79_005No text annotation
J4_3J79_009No text annotation

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