HL_3J79_021

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

3J79|1|A|U|998, 3J79|1|A|A|1002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56547.1

Basepair signature

cWW-R-tSW-cSS-R

Number of instances in this motif group

2

Unit IDs

3J79|1|A|A|995
3J79|1|A|C|996
3J79|1|A|G|997
3J79|1|A|U|998
3J79|1|A|G|999
3J79|1|A|C|1000
3J79|1|A|A|1001
3J79|1|A|A|1002
3J79|1|A|A|1003
3J79|1|A|U|1004

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein uL3

Chain W

60S ribosomal protein uL22

Chain c

60S ribosomal protein eL37