HL_3J79_026

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGCUC

Length

8 nucleotides

Bulged bases

3J79|1|A|C|1281, 3J79|1|A|U|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89583.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

14

Unit IDs

3J79|1|A|G|1276
3J79|1|A|G|1277
3J79|1|A|A|1278
3J79|1|A|U|1279
3J79|1|A|G|1280
3J79|1|A|C|1281
3J79|1|A|U|1282
3J79|1|A|C|1283

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein uL30

Chain 8

60S ribosomal protein eL32

Chain 9

60S ribosomal protein eL33

Chain B

5S ribosomal RNA; 5S rRNA