HL_3J79_034

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

3J79|1|A|U|1749, 3J79|1|A|U|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87383.1

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

1

Unit IDs

3J79|1|A|G|1742
3J79|1|A|U|1743
3J79|1|A|U|1744
3J79|1|A|G|1745
3J79|1|A|A|1746
3J79|1|A|U|1747
3J79|1|A|A|1748
3J79|1|A|U|1749
3J79|1|A|U|1750
3J79|1|A|C|1751

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein eL19

Chain Y

60S ribosomal protein uL23

Chain a

60S ribosomal protein eL34

Chain e

60S ribosomal protein eL39