HL_3J79_049

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

3J79|1|A|A|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31303.1

Basepair signature

cWW-tSH-R-tHW-R-R

Number of instances in this motif group

6

Unit IDs

3J79|1|A|G|2546
3J79|1|A|U|2547
3J79|1|A|A|2548
3J79|1|A|A|2549
3J79|1|A|C|2550
3J79|1|A|U|2551
3J79|1|A|A|2552
3J79|1|A|U|2553
3J79|1|A|G|2554
3J79|1|A|A|2555
3J79|1|A|C|2556

Current chains

Chain A

28S ribosomal RNA

Nearby chains