3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAAAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41542.1
Basepair signature
cWW-R-R-R-R-R
Number of instances in this motif group
30

Unit IDs

3J79|1|A|U|3032
3J79|1|A|A|3033
3J79|1|A|A|3034
3J79|1|A|A|3035
3J79|1|A|A|3036
3J79|1|A|G|3037
3J79|1|A|G|3038
3J79|1|A|G|3039

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain Q
60S ribosomal protein uL16
Chain V
60S ribosomal protein eL21
Chain i
60S ribosomal protein eL44

Coloring options:

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