HL_3J79_074

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J79_074 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2383

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J79|1|C|C|128
3J79|1|C|U|129
3J79|1|C|G|133

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain 3

60S ribosomal protein uL29