HL_3J79_075
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCACUAAUGU
- Length
- 10 nucleotides
- Bulged bases
- 3J79|1|A|U|595, 3J79|1|A|U|598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J79_075 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3937
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J79|1|A|G|591
3J79|1|A|C|592
3J79|1|A|A|593
3J79|1|A|C|594
3J79|1|A|U|595
3J79|1|A|A|596
3J79|1|A|A|597
3J79|1|A|U|598
3J79|1|A|G|599
3J79|1|A|U|600
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein uL6
- Chain N
- 60S ribosomal protein eL14
- Chain U
- 60S ribosomal protein eL20
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