HL_3J7A_012

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUUAAAACCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_95765.1

Basepair signature

cWW-R-R-R-R-R-R-R-R

Number of instances in this motif group

11

Unit IDs

3J7A|1|A|A|528
3J7A|1|A|U|529
3J7A|1|A|U|530
3J7A|1|A|U|531
3J7A|1|A|A|532
3J7A|1|A|A|533
3J7A|1|A|A|534
3J7A|1|A|A|535
3J7A|1|A|C|536
3J7A|1|A|C|537
3J7A|1|A|U|538

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain E

40S ribosomal protein uS4