Motif HL_95765.1 Version HL_95765.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | 3-10 | 4-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3JAM_023 | 3JAM | 0.7113 | 1 | 2 | SSU rRNA | U | 1053 | U | 1054 | U | 1055 | U | 1056 | C | 1058 | U | 1059 | U | 1060 | A | 1061 | U | 1062 | G | 1063 | A | 1064 | cWW | ncWW | ntWWa | |||
| 2 | HL_2ZNI_005 | 2ZNI | 0.5449 | 0 | D | bacterial tRNA | G | 30 | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | U | 40 | ncWW | ntSH | ||||
| 3 | HL_4UYK_001 | 4UYK | 0.4633 | 0 | R | SRP RNA | G | 21 | G | 22 | U | 23 | U | 24 | C | 25 | G | 26 | G | 27 | C | 28 | G | 29 | U | 30 | C | 31 | cWW | |||||
| 4 | HL_3J7A_012 | 3J7A | 0.2341 | 0 | A | SSU rRNA | A | 528 | U | 529 | U | 530 | U | 531 | A | 532 | A | 533 | A | 534 | A | 535 | C | 536 | C | 537 | U | 538 | cWW | ntSH | tSH | |||
| 5 | HL_4BTS_123 | 4BTS | 0.0000 | 0 | DA | SSU rRNA | G | 514 | U | 515 | G | 516 | U | 517 | A | 518 | A | 519 | A | 520 | U | 521 | C | 522 | U | 523 | C | 524 | cWW | cwW | ntSH | |||
| 6 | HL_1Y0Q_008 | 1Y0Q | 0.2771 | 0 | A | Group I catalytic intron | G | 224 | A | 225 | G | 226 | U | 227 | A | 228 | A | 229 | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | cWW | ncwW | ntSHa | |||
| 7 | HL_4WSM_225 | 4WSM | 0.4182 | 0 | 3L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | G | 41 | cWW | cSW | ||||
| 8 | HL_3J7R_114 | 3J7R | 0.5748 | 0 | S6 | tRNA | G | 30 | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | C | 40 | cWW | ncWw | ||||
| 9 | HL_5IMQ_005 | 5IMQ | 0.5825 | 0 | 5 | tRNA | G | 30 | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | C | 40 | cWW | ncWH | ||||
| 10 | HL_3J7P_063 | 3J7P | 0.5694 | 0 | 5 | LSU rRNA | G | 4495 | A | 4496 | U | 4497 | U | 4498 | G | 4499 | U | 4500 | U | 4501 | C | 4502 | A | 4503 | C | 4504 | C | 4505 | cWW | cWW | ||||
| 11 | HL_4V7M_039 | 4V7M | 0.5623 | 0 | AY | tRNA | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | A | 36 | U | 37 | U | 38 | C | 39 | ncWW | ncWH | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUGAAAAUC | 2 |
| UUUUUCUUAUGA | 1 |
| GACUCUAAAUU | 1 |
| GGUUCGGCGUC | 1 |
| AUUUAAAACCU | 1 |
| GUGUAAAUCUC | 1 |
| GAGUAACGAAC | 1 |
| CCUUGAGGUGG | 1 |
| GAUUGUUCACC | 1 |
| GAUUGUGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGAAAAU | 2 |
| UUUUCUUAUG | 1 |
| ACUCUAAAU | 1 |
| GUUCGGCGU | 1 |
| UUUAAAACC | 1 |
| UGUAAAUCU | 1 |
| AGUAACGAA | 1 |
| CUUGAGGUG | 1 |
| AUUGUUCAC | 1 |
| AUUGUGAUU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.23 | Avg 0.56 | Max 0.93
Coloring options: