HL_3J7P_020

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

3J7P|1|5|U|1596, 3J7P|1|5|A|1600, 3J7P|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01306.1

Basepair signature

cWW-R-tSW-R-R

Number of instances in this motif group

10

Unit IDs

3J7P|1|5|A|1593
3J7P|1|5|C|1594
3J7P|1|5|G|1595
3J7P|1|5|U|1596
3J7P|1|5|G|1597
3J7P|1|5|C|1598
3J7P|1|5|A|1599
3J7P|1|5|A|1600
3J7P|1|5|A|1601
3J7P|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22

Chain j

Ribosomal protein eL37