3J7P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J7P_111 | 1/5/30:52 | No text annotation | ||
| HL_3J7P_001 | 1/5/37:44 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_3J7P_002 | 1/5/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_3J7P_003 | 1/5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_3J7P_004 | 1/5/131:137 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_3J7P_005 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_3J7P_006 | 1/5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_3J7P_007 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_3J7P_113 | 1/5/285:302 | No text annotation | ||
| HL_3J7P_008 | 1/5/289:298 | No text annotation | ||
| HL_3J7P_009 | 1/5/314:323 | Pseudoknot geometry | geometric HL_5TBW_009 NA | |
| HL_3J7P_010 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_3J7P_011 | 1/5/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_3J7P_115 | 1/5/996:1047 | No text annotation | ||
| HL_3J7P_116 | 1/5/1172:1189 | No text annotation | ||
| HL_3J7P_012 | 1/5/1178:1183 | GNRA | geometric HL_5J7L_007 HL_37824.7 | |
| HL_3J7P_013 | 1/5/1252:1258 | GNRA | geometric HL_4LFB_012 HL_37824.7 | |
| HL_3J7P_014 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_3J7P_015 | 1/5/1364:1373 | No text annotation | ||
| HL_3J7P_016 | 1/5/1406:1411 | No text annotation | ||
| HL_3J7P_017 | 1/5/1436:1448 | No text annotation | ||
| HL_3J7P_018 | 1/5/1479:1486 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_3J7P_019 | 1/5/1561:1566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_3J7P_020 | 1/5/1593:1602 | No text annotation | geometric HL_4V9F_024 HL_88205.2 | |
| HL_3J7P_021 | 1/5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_3J7P_022 | 1/5/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_3J7P_023 | 1/5/1763:1769 | GNRA | geometric HL_3RG5_007 HL_37824.7 | |
| HL_3J7P_024 | 1/5/1814:1823 | No text annotation | ||
| HL_3J7P_133 | 1/5/1864:1870 | GNRA | homologous HL_8P9A_137 HL_37824.7 | |
| HL_3J7P_026 | 1/5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_3J7P_119 | 1/5/1978:1988 | No text annotation | ||
| HL_3J7P_028 | 1/5/2006:2013 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_3J7P_029 | 1/5/2130:2244 | Mini UNCG | geometric HL_8C3A_198 NA | |
| HL_3J7P_030 | 1/5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_3J7P_031 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_3J7P_032 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_3J7P_033 | 1/5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_3J7P_034 | 1/5/2487:2491 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
| HL_3J7P_035 | 1/5/2522:2533 | No text annotation | ||
| HL_3J7P_036 | 1/5/2558:2569 | No text annotation | ||
| HL_3J7P_037 | 1/5/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_3J7P_120 | 1/5/2622:2634 | No text annotation | geometric HL_5E6M_001 HL_99769.3 | |
| HL_3J7P_038 | 1/5/2623:2633 | No text annotation | ||
| HL_3J7P_039 | 1/5/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_3J7P_040 | 1/5/2705:2710 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3J7P_041 | 1/5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_3J7P_042 | 1/5/2792:2799 | No text annotation | geometric HL_5TBW_041 NA | |
| HL_3J7P_043 | 1/5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_3J7P_044 | 1/5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_3J7P_121 | 1/5/2910:3584 | No text annotation | ||
| HL_3J7P_045 | 1/5/3614:3618 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_3J7P_046 | 1/5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_3J7P_047 | 1/5/3667:3675 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_3J7P_048 | 1/5/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_3J7P_049 | 1/5/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_3J7P_122 | 1/5/3781:3811 | No text annotation | ||
| HL_3J7P_050 | 1/5/3795:3805 | No text annotation | ||
| HL_3J7P_051 | 1/5/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_3J7P_052 | 1/5/3948:4065 | No text annotation | geometric HL_5AMQ_001 HL_48417.5 | |
| HL_3J7P_053 | 1/5/4102:4107 | UNCG | geometric HL_4PDB_001 HL_34617.5 | |
| HL_3J7P_054 | 1/5/4139:4145 | No text annotation | geometric HL_6D12_001 HL_48417.5 | |
| HL_3J7P_055 | 1/5/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_3J7P_056 | 1/5/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_3J7P_057 | 1/5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_3J7P_058 | 1/5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_3J7P_059 | 1/5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_3J7P_123 | 1/5/4347:4365 | No text annotation | ||
| HL_3J7P_060 | 1/5/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_3J7P_124 | 1/5/4412:4430 | No text annotation | ||
| HL_3J7P_061 | 1/5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_3J7P_062 | 1/5/4473:4481 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_3J7P_063 | 1/5/4495:4505 | No text annotation | ||
| HL_3J7P_064 | 1/5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_3J7P_065 | 1/5/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_3J7P_066 | 1/5/4644:4653 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_3J7P_067 | 1/5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_3J7P_068 | 1/5/4907:4914 | No text annotation | ||
| HL_3J7P_069 | 1/5/4972:4986 | No text annotation | ||
| HL_3J7P_070 | 1/5/5021:5028 | No text annotation | geometric HL_8C3A_018 NA | |
| HL_3J7P_071 | 1/7/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3J7P_072 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_3J7P_073 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_3J7P_074 | 1/8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_3J7P_075 | 1/8/107:112 | No text annotation | ||
| HL_3J7P_076 | 1/8/121:129 | No text annotation | geometric HL_4V88_194 NA | |
| HL_3J7P_077 | 1/S2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_3J7P_078 | 1/S2/69:80 | No text annotation | ||
| HL_3J7P_079 | 1/S2/152:166 | No text annotation | ||
| HL_3J7P_080 | 1/S2/197:202 | GNRA | geometric HL_5J7L_007 HL_37824.7 | |
| HL_3J7P_126 | 1/S2/223:298 | No text annotation | ||
| HL_3J7P_081 | 1/S2/288:295 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_3J7P_082 | 1/S2/322:329 | No text annotation | ||
| HL_3J7P_127 | 1/S2/375:389 | No text annotation | ||
| HL_3J7P_083 | 1/S2/376:388 | No text annotation | ||
| HL_3J7P_084 | 1/S2/415:423 | No text annotation | ||
| HL_3J7P_085 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_3J7P_086 | 1/S2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_3J7P_128 | 1/S2/495:508 | No text annotation | ||
| HL_3J7P_087 | 1/S2/496:506 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3J7P_088 | 1/S2/539:544 | GNRA | geometric HL_5J7L_007 HL_37824.7 | |
| HL_3J7P_089 | 1/S2/566:584 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3J7P_129 | 1/S2/601:621 | No text annotation | ||
| HL_3J7P_090 | 1/S2/617:624 | No text annotation | geometric HL_6D12_001 HL_48417.5 | |
| HL_3J7P_091 | 1/S2/698:732 | No text annotation | ||
| HL_3J7P_093 | 1/S2/833:841 | No text annotation | ||
| HL_3J7P_094 | 1/S2/885:901 | No text annotation | geometric HL_6UFM_001 HL_04642.1 | |
| HL_3J7P_095 | 1/S2/956:967 | No text annotation | ||
| HL_3J7P_096 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_3J7P_097 | 1/S2/1108:1124 | No text annotation | ||
| HL_3J7P_098 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_3J7P_099 | 1/S2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_3J7P_100 | 1/S2/1244:1255 | tRNA D-loop | geometric HL_4TUE_033 HL_93616.2 | |
| HL_3J7P_101 | 1/S2/1280:1317 | No text annotation | ||
| HL_3J7P_102 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_3J7P_103 | 1/S2/1366:1373 | T-loop related | geometric HL_8C3A_220 NA | |
| HL_3J7P_130 | 1/S2/1420:1427 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_3J7P_104 | 1/S2/1421:1426 | No text annotation | ||
| HL_3J7P_105 | 1/S2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_3J7P_106 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_3J7P_107 | 1/S2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_3J7P_131 | 1/S2/1657:1667 | No text annotation | ||
| HL_3J7P_108 | 1/S2/1658:1666 | No text annotation | ||
| HL_3J7P_132 | 1/S2/1761:1771 | No text annotation | ||
| HL_3J7P_110 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J7P_112 | No text annotation | ||
| HL_3J7P_114 | No text annotation | ||
| HL_3J7P_117 | No text annotation | ||
| HL_3J7P_118 | No text annotation | ||
| HL_3J7P_025 | tRNA anticodon loop | ||
| HL_3J7P_027 | No text annotation | ||
| HL_3J7P_125 | No text annotation | ||
| HL_3J7P_092 | No text annotation | ||
| HL_3J7P_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J7P_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_3J7P_238 | 1/5/11:14, 1/8/143:145 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_87907.2 | |
| IL_3J7P_002 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_89505.4 | |
| IL_3J7P_003 | 1/5/16:18, 1/8/139:141 | No text annotation | ||
| IL_3J7P_239 | 1/5/16:19, 1/8/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_85033.2 | |
| IL_3J7P_004 | 1/5/26:29, 1/5/53:57 | No text annotation | ||
| IL_3J7P_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_3J7P_006 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_3J7P_007 | 1/5/117:122, 1/5/147:154 | No text annotation | ||
| IL_3J7P_241 | 1/5/123:127, 1/5/141:146 | Partly complementary | geometric IL_6CZR_167 NA | |
| IL_3J7P_008 | 1/5/124:126, 1/5/142:145 | No text annotation | ||
| IL_3J7P_009 | 1/5/160:161, 1/5/274:276 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_3J7P_010 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_3J7P_011 | 1/5/180:184, 1/5/253:256 | No text annotation | geometric IL_1GID_008 NA | |
| IL_3J7P_012 | 1/5/184:189, 1/5/252:253 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.4 | |
| IL_3J7P_013 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_3J7P_014 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_3J7P_015 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_3J7P_016 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_3J7P_017 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_4V9F_001 IL_04021.2 | |
| IL_3J7P_018 | 1/5/443:446, 1/5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_99358.1 | |
| IL_3J7P_019 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_3J7P_020 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_87907.2 | |
| IL_3J7P_302 | 1/5/464:473, 1/5/681:691 | No text annotation | ||
| IL_3J7P_021 | 1/5/482:487, 1/5/669:672 | No text annotation | ||
| IL_3J7P_244 | 1/5/482:496, 1/5/657:672 | No text annotation | ||
| IL_3J7P_022 | 1/5/487:493, 1/5/661:669 | No text annotation | ||
| IL_3J7P_023 | 1/5/493:496, 1/5/657:661 | No text annotation | ||
| IL_3J7P_024 | 1/5/497:499, 1/5/655:656 | No text annotation | ||
| IL_3J7P_025 | 1/5/500:505, 1/5/653:654 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_3J7P_026 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_1U63_004 IL_31462.6 | |
| IL_3J7P_245 | 1/5/512:515, 1/5/646:647 | Multiple bulged bases | geometric IL_3MXH_004 IL_82107.4 | |
| IL_3J7P_028 | 1/5/708:709, 1/5/1287:1289 | No text annotation | ||
| IL_3J7P_029 | 1/5/722:724, 1/5/942:946 | No text annotation | ||
| IL_3J7P_030 | 1/5/726:731, 1/5/938:940 | No text annotation | ||
| IL_3J7P_031 | 1/5/731:735, 1/5/928:938 | No text annotation | ||
| IL_3J7P_032 | 1/5/735:737, 1/5/927:928 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_3J7P_033 | 1/5/740:742, 1/5/922:924 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_3J7P_034 | 1/5/745:750, 1/5/912:919 | No text annotation | ||
| IL_3J7P_303 | 1/5/745:755, 1/5/908:919 | No text annotation | ||
| IL_3J7P_035 | 1/5/750:755, 1/5/908:912 | No text annotation | ||
| IL_3J7P_247 | 1/5/989:992, 1/5/1051:1064 | No text annotation | ||
| IL_3J7P_037 | 1/5/1074:1079, 1/5/1221:1236 | No text annotation | ||
| IL_3J7P_038 | 1/5/1081:1082, 1/5/1217:1219 | No text annotation | ||
| IL_3J7P_039 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation | ||
| IL_3J7P_040 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_7KGA_001 IL_61258.15 | |
| IL_3J7P_248 | 1/5/1094:1097, 1/5/1198:1202 | No text annotation | geometric IL_1HYS_004 IL_64231.5 | |
| IL_3J7P_041 | 1/5/1097:1098, 1/5/1197:1199 | Multiple bulged bases | geometric IL_7Q80_001 IL_84476.1 | |
| IL_3J7P_042 | 1/5/1172:1177, 1/5/1184:1189 | No text annotation | ||
| IL_3J7P_043 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_3J7P_044 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation | ||
| IL_3J7P_045 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4WF9_087 IL_09705.15 | |
| IL_3J7P_046 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_3J7P_047 | 1/5/1474:1478, 1/5/1487:1490 | No text annotation | ||
| IL_3J7P_048 | 1/5/1520:1526, 1/5/1648:1657 | No text annotation | ||
| IL_3J7P_049 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_3J7P_050 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | geometric IL_5TBW_030 NA | |
| IL_3J7P_051 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_3J7P_052 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_3J7P_053 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_3J7P_054 | 1/5/1672:1674, 1/5/1681:1682 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3J7P_055 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_3J7P_056 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_3J7P_057 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_3J7P_058 | 1/5/1739:1744, 1/5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_3J7P_059 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_3J7P_251 | 1/5/1746:1759, 1/5/1773:1784 | No text annotation | ||
| IL_3J7P_060 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_3J7P_061 | 1/5/1751:1759, 1/5/1773:1779 | No text annotation | ||
| IL_3J7P_062 | 1/5/1761:1763, 1/5/1769:1771 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_3J7P_253 | 1/5/1855:1860, 1/5/1874:1879 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_3J7P_063 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_3J7P_065 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_3J7P_066 | 1/5/1911:1918, 1/5/2064:2065 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_3J7P_067 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_3J7P_068 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | geometric IL_8CRE_390 IL_61258.15 | |
| IL_3J7P_069 | 1/5/1924:1933, 1/5/2053:2060 | No text annotation | ||
| IL_3J7P_070 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_3J7P_071 | 1/5/1946:1950, 1/5/2033:2036 | No text annotation | geometric IL_6L0Y_002 IL_13404.2 | |
| IL_3J7P_072 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_3J7P_073 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_3J7P_074 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_3J7P_256 | 1/5/2082:2085, 1/5/2272:2274 | Isolated non-canonical cWW pair | geometric IL_7A0S_042 IL_87907.2 | |
| IL_3J7P_075 | 1/5/2083:2085, 1/5/2272:2273 | No text annotation | ||
| IL_3J7P_257 | 1/5/2087:2128, 1/5/2246:2270 | No text annotation | ||
| IL_3J7P_076 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation | homologous IL_8P9A_285 IL_42997.3 | |
| IL_3J7P_304 | 1/5/2290:2294, 1/5/2340:2345 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
| IL_3J7P_077 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_3J7P_078 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_3J7P_079 | 1/5/2310:2314, 1/5/2325:2328 | No text annotation | ||
| IL_3J7P_305 | 1/5/2311:2315, 1/5/2324:2327 | No text annotation | geometric IL_8UIW_002 IL_77658.1 | |
| IL_3J7P_080 | 1/5/2358:2364, 1/5/3858:3863 | No text annotation | homologous IL_8P9A_289 IL_26307.2 | |
| IL_3J7P_081 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_3J7P_082 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_3J7P_083 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_3J7P_084 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_3J7P_085 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_3J7P_306 | 1/5/2598:2605, 1/5/2734:2747 | No text annotation | ||
| IL_3J7P_086 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_3J7P_087 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_3J7P_088 | 1/5/2642:2648, 1/5/2685:2692 | No text annotation | ||
| IL_3J7P_089 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_00225.13 | |
| IL_3J7P_307 | 1/5/2655:2662, 1/5/2672:2679 | No text annotation | ||
| IL_3J7P_090 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation | ||
| IL_3J7P_263 | 1/5/2702:2705, 1/5/2710:2714 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_51479.1 | |
| IL_3J7P_091 | 1/5/2703:2705, 1/5/2710:2713 | No text annotation | ||
| IL_3J7P_092 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_3J7P_308 | 1/5/2841:2846, 1/5/3842:3847 | No text annotation | ||
| IL_3J7P_093 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_3J7P_094 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_3J7P_265 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_3J7P_095 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_3J7P_096 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_3J7P_097 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_3J7P_266 | 1/5/2893:2897, 1/5/3602:3608 | No text annotation | ||
| IL_3J7P_098 | 1/5/2894:2897, 1/5/3602:3607 | No text annotation | ||
| IL_3J7P_099 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation | ||
| IL_3J7P_100 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_3J7P_101 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_3J7P_102 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_3J7P_103 | 1/5/3704:3705, 1/5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_3J7P_267 | 1/5/3708:3724, 1/5/3729:3742 | No text annotation | ||
| IL_3J7P_104 | 1/5/3780:3781, 1/5/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_3J7P_105 | 1/5/3781:3795, 1/5/3805:3811 | No text annotation | ||
| IL_3J7P_106 | 1/5/3895:3902, 1/5/4558:4565 | No text annotation | ||
| IL_3J7P_107 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_3J7P_108 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_3J7P_109 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_3J7P_268 | 1/5/4078:4088, 1/5/4161:4168 | No text annotation | ||
| IL_3J7P_110 | 1/5/4079:4088, 1/5/4161:4167 | No text annotation | ||
| IL_3J7P_111 | 1/5/4095:4098, 1/5/4111:4113 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_3J7P_112 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_3J7P_269 | 1/5/4238:4243, 1/5/4267:4286 | No text annotation | ||
| IL_3J7P_113 | 1/5/4239:4243, 1/5/4267:4285 | No text annotation | ||
| IL_3J7P_114 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_3J7P_115 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_3J7P_116 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_3J7P_117 | 1/5/4347:4351, 1/5/4363:4365 | No text annotation | geometric IL_8C3A_419 NA | |
| IL_3J7P_118 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.6 | |
| IL_3J7P_119 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_3J7P_120 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_3J7P_121 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_3J7P_122 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_3J7P_123 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | geometric IL_4V9F_086 IL_07039.3 | |
| IL_3J7P_270 | 1/5/4453:4458, 1/5/4520:4528 | No text annotation | ||
| IL_3J7P_124 | 1/5/4456:4458, 1/5/4520:4524 | No text annotation | ||
| IL_3J7P_125 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_3J7P_126 | 1/5/4472:4473, 1/5/4481:4483 | No text annotation | ||
| IL_3J7P_271 | 1/5/4534:4540, 1/5/4545:4552 | No text annotation | ||
| IL_3J7P_127 | 1/5/4535:4538, 1/5/4547:4551 | No text annotation | ||
| IL_3J7P_128 | 1/5/4577:4579, 1/5/4723:4726 | No text annotation | geometric IL_8C3A_419 NA | |
| IL_3J7P_129 | 1/5/4579:4582, 1/5/4721:4723 | No text annotation | ||
| IL_3J7P_130 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_3J7P_131 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_3J7P_132 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_3J7P_133 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_3J7P_134 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_3J7P_135 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.6 | |
| IL_3J7P_273 | 1/5/4638:4642, 1/5/4655:4661 | No text annotation | ||
| IL_3J7P_136 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_3J7P_137 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_3J7P_274 | 1/5/4740:4746, 1/5/4954:4959 | No text annotation | ||
| IL_3J7P_275 | 1/5/4755:4765, 1/5/4869:4878 | No text annotation | ||
| IL_3J7P_140 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_3J7P_141 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation | ||
| IL_3J7P_142 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation | ||
| IL_3J7P_143 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_3J7P_144 | 1/5/4996:5000, 1/5/5050:5055 | No text annotation | ||
| IL_3J7P_276 | 1/5/4996:5010, 1/5/5038:5055 | No text annotation | ||
| IL_3J7P_145 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_3J7P_146 | 1/5/5002:5010, 1/5/5038:5045 | No text annotation | ||
| IL_3J7P_147 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_3J7P_148 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_3J7P_149 | 1/7/15:16, 1/7/62:64 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_3J7P_277 | 1/7/15:18, 1/7/60:64 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_3J7P_150 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_3J7P_151 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_3J7P_152 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_3J7P_153 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_3J7P_154 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4Y1M_005 IL_07785.1 | |
| IL_3J7P_155 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_3J7P_156 | 1/S2/23:29, 1/S2/645:651 | No text annotation | ||
| IL_3J7P_157 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_3J7P_158 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_3J7P_159 | 1/S2/41:47, 1/S2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_3J7P_160 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_3J7P_278 | 1/S2/62:68, 1/S2/81:86 | No text annotation | ||
| IL_3J7P_161 | 1/S2/63:68, 1/S2/81:85 | No text annotation | ||
| IL_3J7P_162 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_28037.2 | |
| IL_3J7P_163 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_3J7P_309 | 1/S2/110:115, 1/S2/348:351 | No text annotation | homologous IL_8P9A_380 IL_77658.1 | |
| IL_3J7P_164 | 1/S2/112:115, 1/S2/348:349 | Single bulged A | geometric IL_4WF9_098 IL_31462.6 | |
| IL_3J7P_165 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_3J7P_166 | 1/S2/123:124, 1/S2/339:341 | Single stack bend | geometric IL_5TBW_035 NA | |
| IL_3J7P_167 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_3J7P_168 | 1/S2/188:192, 1/S2/207:211 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_3J7P_169 | 1/S2/218:220, 1/S2/301:302 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_3J7P_281 | 1/S2/218:223, 1/S2/298:302 | No text annotation | ||
| IL_3J7P_170 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_3J7P_171 | 1/S2/317:320, 1/S2/331:333 | No text annotation | homologous IL_4V88_400 NA | |
| IL_3J7P_172 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_3J7P_173 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_3J7P_174 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_3J7P_175 | 1/S2/413:415, 1/S2/423:424 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_3J7P_176 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_3J7P_177 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_3J7P_178 | 1/S2/491:495, 1/S2/508:509 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_3J7P_179 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_3J7P_180 | 1/S2/528:530, 1/S2/554:557 | No text annotation | ||
| IL_3J7P_284 | 1/S2/531:537, 1/S2/546:553 | No text annotation | ||
| IL_3J7P_182 | 1/S2/596:597, 1/S2/639:641 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_3J7P_183 | 1/S2/599:609, 1/S2/634:637 | No text annotation | ||
| IL_3J7P_285 | 1/S2/599:600, 1/S2/622:637 | No text annotation | ||
| IL_3J7P_184 | 1/S2/609:617, 1/S2/624:634 | No text annotation | ||
| IL_3J7P_185 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_3J7P_186 | 1/S2/665:671, 1/S2/1161:1162 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.4 | |
| IL_3J7P_187 | 1/S2/673:675, 1/S2/1030:1032 | No text annotation | ||
| IL_3J7P_286 | 1/S2/673:680, 1/S2/1025:1032 | No text annotation | ||
| IL_3J7P_188 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation | ||
| IL_3J7P_189 | 1/S2/694:696, 1/S2/734:736 | No text annotation | homologous IL_8P9A_408 IL_44465.1 | |
| IL_3J7P_190 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_3J7P_191 | 1/S2/804:807, 1/S2/856:859 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_3J7P_192 | 1/S2/807:815, 1/S2/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_3J7P_193 | 1/S2/815:831, 1/S2/843:849 | No text annotation | ||
| IL_3J7P_194 | 1/S2/873:879, 1/S2/907:912 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
| IL_3J7P_195 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_3J7P_196 | 1/S2/924:927, 1/S2/1014:1018 | Tandem non-canonical cWW pairs | homologous IL_4V88_429 NA | |
| IL_3J7P_288 | 1/S2/928:931, 1/S2/1010:1013 | No text annotation | homologous IL_8P9A_419 IL_85033.2 | |
| IL_3J7P_198 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_3J7P_199 | 1/S2/938:941, 1/S2/985:1004 | No text annotation | ||
| IL_3J7P_200 | 1/S2/943:945, 1/S2/981:983 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
| IL_3J7P_310 | 1/S2/948:956, 1/S2/967:978 | No text annotation | ||
| IL_3J7P_201 | 1/S2/951:956, 1/S2/967:975 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
| IL_3J7P_202 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | geometric IL_8C3A_441 NA | |
| IL_3J7P_203 | 1/S2/1047:1054, 1/S2/1064:1071 | No text annotation | ||
| IL_3J7P_204 | 1/S2/1098:1103, 1/S2/1129:1134 | No text annotation | ||
| IL_3J7P_205 | 1/S2/1168:1176, 1/S2/1185:1191 | 9x7 Sarcin-Ricin with inserted C; G-bulge | geometric IL_6CZR_146 NA | |
| IL_3J7P_206 | 1/S2/1202:1206, 1/S2/1692:1697 | No text annotation | ||
| IL_3J7P_207 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_3J7P_208 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_3J7P_209 | 1/S2/1230:1233, 1/S2/1525:1528 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_3J7P_210 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_3J7P_211 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_3J7P_212 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | homologous IL_8P9A_438 IL_76319.5 | |
| IL_3J7P_293 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_3J7P_213 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_49061.1 | |
| IL_3J7P_214 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_3J7P_215 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_3J7P_294 | 1/S2/1350:1351, 1/S2/1360:1379 | No text annotation | ||
| IL_3J7P_216 | 1/S2/1363:1366, 1/S2/1373:1375 | No text annotation | ||
| IL_3J7P_217 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_3J7P_218 | 1/S2/1402:1406, 1/S2/1440:1444 | No text annotation | homologous IL_8CRE_459 NA | |
| IL_3J7P_219 | 1/S2/1406:1413, 1/S2/1433:1440 | No text annotation | ||
| IL_3J7P_220 | 1/S2/1415:1419, 1/S2/1428:1431 | No text annotation | ||
| IL_3J7P_221 | 1/S2/1453:1456, 1/S2/1470:1475 | No text annotation | ||
| IL_3J7P_295 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_3J7P_222 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_3J7P_296 | 1/S2/1560:1563, 1/S2/1572:1575 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_85033.2 | |
| IL_3J7P_224 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_3J7P_225 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_3J7P_226 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3J7P_227 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_3J7P_297 | 1/S2/1706:1711, 1/S2/1822:1828 | No text annotation | ||
| IL_3J7P_228 | 1/S2/1708:1711, 1/S2/1822:1826 | Non canonical cWW and near pair | homologous IL_4V88_466 NA | |
| IL_3J7P_229 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_3J7P_230 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_3J7P_231 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_3J7P_232 | 1/S2/1727:1731, 1/S2/1803:1807 | No text annotation | geometric IL_4V88_422 NA | |
| IL_3J7P_299 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_3J7P_234 | 1/S2/1739:1741, 1/S2/1793:1795 | No text annotation | ||
| IL_3J7P_311 | 1/S2/1739:1746, 1/S2/1788:1795 | No text annotation | ||
| IL_3J7P_235 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | geometric IL_8C3A_480 NA | |
| IL_3J7P_301 | 1/S2/1748:1752, 1/S2/1780:1786 | No text annotation | ||
| IL_3J7P_237 | 1/S2/1839:1841, 1/S2/1858:1859 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J7P_240 | No text annotation | ||
| IL_3J7P_242 | No text annotation | ||
| IL_3J7P_243 | No text annotation | ||
| IL_3J7P_027 | Isolated non-canonical cWW with bulges | ||
| IL_3J7P_246 | No text annotation | ||
| IL_3J7P_036 | No text annotation | ||
| IL_3J7P_249 | Triple sheared with non-canonical cWW | ||
| IL_3J7P_250 | No text annotation | ||
| IL_3J7P_252 | Tandem non-canonical cWW pairs | ||
| IL_3J7P_064 | No text annotation | ||
| IL_3J7P_254 | No text annotation | ||
| IL_3J7P_255 | Triple non-canonical cWW pairs | ||
| IL_3J7P_258 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_3J7P_259 | Isolated non-canonical cWW pair | ||
| IL_3J7P_260 | No text annotation | ||
| IL_3J7P_261 | No text annotation | ||
| IL_3J7P_262 | No text annotation | ||
| IL_3J7P_264 | No text annotation | ||
| IL_3J7P_272 | No text annotation | ||
| IL_3J7P_138 | No text annotation | ||
| IL_3J7P_139 | No text annotation | ||
| IL_3J7P_279 | Triple non-canonical cWW pairs | ||
| IL_3J7P_280 | No text annotation | ||
| IL_3J7P_282 | No text annotation | ||
| IL_3J7P_283 | No text annotation | ||
| IL_3J7P_181 | No text annotation | ||
| IL_3J7P_287 | Triple non-canonical cWW pairs | ||
| IL_3J7P_197 | No text annotation | ||
| IL_3J7P_289 | No text annotation | ||
| IL_3J7P_290 | No text annotation | ||
| IL_3J7P_291 | No text annotation | ||
| IL_3J7P_292 | No text annotation | ||
| IL_3J7P_223 | No text annotation | ||
| IL_3J7P_298 | No text annotation | ||
| IL_3J7P_233 | Triple sheared | ||
| IL_3J7P_300 | No text annotation | ||
| IL_3J7P_236 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J7P_001 | 1/5/112:116, 1/5/155:160, 1/5/276:278 | No text annotation | ||
| J3_3J7P_025 | 1/5/194:199, 1/5/215:228, 1/5/240:247 | No text annotation | ||
| J3_3J7P_026 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_3J7P_002 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_3J7P_042 | 1/5/443:458, 1/5/698:704, 1/5/1293:1304 | No text annotation | ||
| J3_3J7P_028 | 1/5/708:713, 1/5/955:978, 1/5/1276:1289 | No text annotation | ||
| J3_3J7P_003 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_3J7P_029 | 1/5/1531:1537, 1/5/1622:1626, 1/5/1636:1643 | No text annotation | ||
| J3_3J7P_004 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_3J7P_005 | 1/5/1969:1971, 1/5/1995:2001, 1/5/2016:2018 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_3J7P_006 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_3J7P_007 | 1/5/2402:2405, 1/5/2785:2792, 1/5/2799:2802 | No text annotation | ||
| J3_3J7P_008 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_3J7P_043 | 1/5/2450:2456, 1/5/2465:2476, 1/5/2501:2509 | No text annotation | ||
| J3_3J7P_044 | 1/5/2549:2556, 1/5/2571:2575, 1/5/2757:2770 | No text annotation | ||
| J3_3J7P_009 | 1/5/2575:2578, 1/5/2583:2589, 1/5/2756:2757 | No text annotation | ||
| J3_3J7P_010 | 1/5/3934:3939, 1/5/4074:4078, 1/5/4168:4176 | No text annotation | ||
| J3_3J7P_011 | 1/5/4091:4095, 1/5/4113:4129, 1/5/4155:4158 | No text annotation | ||
| J3_3J7P_032 | 1/5/4091:4099, 1/5/4110:4129, 1/5/4155:4158 | No text annotation | ||
| J3_3J7P_033 | 1/5/4463:4470, 1/5/4485:4493, 1/5/4507:4513 | No text annotation | ||
| J3_3J7P_034 | 1/5/4748:4754, 1/5/4879:4888, 1/5/4931:4952 | No text annotation | ||
| J3_3J7P_012 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | ||
| J3_3J7P_013 | 1/7/6:14, 1/7/65:66, 1/7/109:113 | No text annotation | ||
| J3_3J7P_014 | 1/8/44:45, 1/8/58:66, 1/8/92:99 | No text annotation | ||
| J3_3J7P_015 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_3J7P_016 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_3J7P_035 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_3J7P_017 | 1/S2/1091:1096, 1/S2/1136:1140, 1/S2/1147:1158 | No text annotation | ||
| J3_3J7P_036 | 1/S2/1091:1103, 1/S2/1129:1140, 1/S2/1147:1158 | No text annotation | ||
| J3_3J7P_018 | 1/S2/1218:1222, 1/S2/1644:1651, 1/S2/1673:1680 | No text annotation | ||
| J3_3J7P_019 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_3J7P_045 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8P9A_078 J3_83516.4 | |
| J3_3J7P_021 | 1/S2/1270:1277, 1/S2/1320:1324, 1/S2/1504:1512 | No text annotation | ||
| J3_3J7P_022 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_3J7P_023 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_3J7P_024 | 1/S2/1391:1395, 1/S2/1450:1453, 1/S2/1475:1479 | No text annotation | ||
| J3_3J7P_040 | 1/S2/1391:1399, 1/S2/1447:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_3J7P_041 | 1/S2/1532:1540, 1/S2/1593:1610, 1/S2/1629:1638 | No text annotation | ||
| J4_3J7P_001 | 1/5/194:199, 1/5/215:222, 1/5/226:228, 1/5/240:247 | No text annotation | ||
| J4_3J7P_008 | 1/5/980:983, 1/5/1070:1074, 1/5/1236:1246, 1/5/1264:1274 | No text annotation | ||
| J4_3J7P_009 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_8CRE_004 J4_69051.6 | |
| J4_3J7P_004 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_3J7P_005 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J4_3J7P_010 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8CRE_021 J4_15241.1 | |
| J4_3J7P_007 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_3J7P_001 | 1/5/111:116, 1/5/155:160, 1/5/276:283, 1/5/304:310, 1/5/327:330 | No text annotation | ||
| J5_3J7P_014 | 1/5/1335:1341, 1/5/1515:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | ||
| J5_3J7P_003 | 1/5/1352:1355, 1/5/1384:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J5_3J7P_015 | 1/5/2358:2371, 1/5/2389:2399, 1/5/2805:2807, 1/5/2819:2829, 1/5/3856:3863 | No text annotation | ||
| J5_3J7P_005 | 1/5/2847:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3841 | No text annotation | ||
| J5_3J7P_006 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_3J7P_007 | 1/5/3903:3911, 1/5/4391:4405, 1/5/4439:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_3J7P_008 | 1/5/3920:3923, 1/5/4188:4192, 1/5/4202:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | ||
| J5_3J7P_009 | 1/5/4228:4237, 1/5/4287:4291, 1/5/4318:4319, 1/5/4328:4345, 1/5/4367:4375 | No text annotation | ||
| J5_3J7P_010 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:596, 1/S2/641:644 | No text annotation | ||
| J5_3J7P_011 | 1/S2/49:57, 1/S2/88:96, 1/S2/434:436, 1/S2/457:462, 1/S2/467:477 | No text annotation | ||
| J5_3J7P_016 | 1/S2/125:144, 1/S2/175:187, 1/S2/212:218, 1/S2/302:315, 1/S2/335:338 | No text annotation | ||
| J5_3J7P_013 | 1/S2/685:696, 1/S2/734:744, 1/S2/797:800, 1/S2/865:873, 1/S2/912:917 | No text annotation | ||
| J6_3J7P_001 | 1/5/3634:3638, 1/5/3650:3657, 1/5/3687:3698, 1/5/3752:3755, 1/5/3769:3780, 1/5/3814:3826 | No text annotation | ||
| J7_3J7P_002 | 1/5/1666:1674, 1/5/1681:1685, 1/5/1852:1855, 1/5/1879:1885, 1/5/1894:1901, 1/5/2075:2081, 1/5/2275:2283 | No text annotation | ||
| J8_3J7P_001 | 1/5/3920:3923, 1/5/4188:4192, 1/5/4202:4205, 1/5/4227:4237, 1/5/4287:4291, 1/5/4318:4319, 1/5/4328:4345, 1/5/4367:4381 | No text annotation | ||
| J10_3J7P_001 | 1/5/19:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:45, 1/8/58:66, 1/8/92:106, 1/8/113:114, 1/8/136:138 | No text annotation | ||
| J10_3J7P_002 | 1/5/19:29, 1/5/53:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:45, 1/8/58:66, 1/8/92:106, 1/8/113:114, 1/8/136:138 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J7P_027 | No text annotation | ||
| J3_3J7P_030 | No text annotation | ||
| J3_3J7P_031 | No text annotation | ||
| J3_3J7P_037 | No text annotation | ||
| J3_3J7P_020 | No text annotation | ||
| J3_3J7P_038 | No text annotation | ||
| J3_3J7P_039 | No text annotation | ||
| J4_3J7P_002 | No text annotation | ||
| J4_3J7P_003 | No text annotation | ||
| J4_3J7P_006 | No text annotation | ||
| J5_3J7P_002 | No text annotation | ||
| J5_3J7P_004 | No text annotation | ||
| J5_3J7P_012 | No text annotation | ||
| J7_3J7P_001 | No text annotation |
Coloring options: