HL_3J7P_035

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUCAGAUCCC

Length

12 nucleotides

Bulged bases

3J7P|1|5|U|2530, 3J7P|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_17554.1

Basepair signature

cWW-R-cHH-tSW-tSH-R

Number of instances in this motif group

1

Unit IDs

3J7P|1|5|G|2522
3J7P|1|5|G|2523
3J7P|1|5|U|2524
3J7P|1|5|U|2525
3J7P|1|5|C|2526
3J7P|1|5|A|2527
3J7P|1|5|G|2528
3J7P|1|5|A|2529
3J7P|1|5|U|2530
3J7P|1|5|C|2531
3J7P|1|5|C|2532
3J7P|1|5|C|2533

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain X

Ribosomal protein uL23

Chain g

Ribosomal protein eL34