HL_3J7P_100

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGACUCAACACG

Length

12 nucleotides

Bulged bases

3J7P|1|S2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72137.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3J7P|1|S2|U|1244
3J7P|1|S2|G|1245
3J7P|1|S2|A|1246
3J7P|1|S2|C|1247
3J7P|1|S2|U|1248
3J7P|1|S2|C|1249
3J7P|1|S2|A|1250
3J7P|1|S2|A|1251
3J7P|1|S2|C|1252
3J7P|1|S2|A|1253
3J7P|1|S2|C|1254
3J7P|1|S2|G|1255

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain SS

Ribosomal protein uS13

Chain SU

Ribosomal protein uS10

Chain Sd

Ribosomal protein uS14