HL_3J7P_101

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCC

Length

38 nucleotides

Bulged bases

3J7P|1|S2|C|1283, 3J7P|1|S2|G|1285, 3J7P|1|S2|C|1292, 3J7P|1|S2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48787.1

Basepair signature

cWW-cWW-tWW-cWH-cSH-cSS-L-L-tHS-R-R-R-cSH-L-cWW-R-R-R-R-R-R-tSH-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3J7P|1|S2|G|1280
3J7P|1|S2|G|1281
3J7P|1|S2|A|1282
3J7P|1|S2|C|1283
3J7P|1|S2|A|1284
3J7P|1|S2|G|1285
3J7P|1|S2|G|1286
3J7P|1|S2|A|1287
3J7P|1|S2|U|1288
3J7P|1|S2|U|1289
3J7P|1|S2|G|1290
3J7P|1|S2|A|1291
3J7P|1|S2|C|1292
3J7P|1|S2|A|1293
3J7P|1|S2|G|1294
3J7P|1|S2|A|1295
3J7P|1|S2|U|1296
3J7P|1|S2|U|1297
3J7P|1|S2|G|1298
3J7P|1|S2|A|1299
3J7P|1|S2|U|1300
3J7P|1|S2|A|1301
3J7P|1|S2|G|1302
3J7P|1|S2|C|1303
3J7P|1|S2|U|1304
3J7P|1|S2|C|1305
3J7P|1|S2|U|1306
3J7P|1|S2|U|1307
3J7P|1|S2|U|1308
3J7P|1|S2|C|1309
3J7P|1|S2|U|1310
3J7P|1|S2|C|1311
3J7P|1|S2|G|1312
3J7P|1|S2|A|1313
3J7P|1|S2|U|1314
3J7P|1|S2|U|1315
3J7P|1|S2|C|1316
3J7P|1|S2|C|1317

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

Ribosomal protein eS10

Chain SM

Ribosomal protein eS12

Chain SP

Ribosomal protein uS19

Chain Sd

Ribosomal protein uS14

Chain Sf

Ribosomal protein eS31