3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AUUGCAAUUAUU
Length
12 nucleotides
Bulged bases
3J7P|1|S2|U|1621, 3J7P|1|S2|U|1622, 3J7P|1|S2|A|1623
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40871.1
Basepair signature
cWW-cWH-tWH-R-R-R
Number of instances in this motif group
8

Unit IDs

3J7P|1|S2|A|1614
3J7P|1|S2|U|1615
3J7P|1|S2|U|1616
3J7P|1|S2|G|1617
3J7P|1|S2|C|1618
3J7P|1|S2|A|1619
3J7P|1|S2|A|1620
3J7P|1|S2|U|1621
3J7P|1|S2|U|1622
3J7P|1|S2|A|1623
3J7P|1|S2|U|1624
3J7P|1|S2|U|1625

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SP
Ribosomal protein uS19
Chain SS
Ribosomal protein uS13
Chain Sd
Ribosomal protein uS14

Coloring options:

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