HL_3J7Q_020

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

3J7Q|1|5|U|1596, 3J7Q|1|5|A|1600, 3J7Q|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_020 not in the Motif Atlas

Geometric match to HL_4V9F_024

Geometric discrepancy: 0.1963

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

3J7Q|1|5|A|1593
3J7Q|1|5|C|1594
3J7Q|1|5|G|1595
3J7Q|1|5|U|1596
3J7Q|1|5|G|1597
3J7Q|1|5|C|1598
3J7Q|1|5|A|1599
3J7Q|1|5|A|1600
3J7Q|1|5|A|1601
3J7Q|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22

Chain j

Ribosomal protein eL37