HL_3J7Q_049

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

3J7Q|1|5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.2034

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J7Q|1|5|G|3757
3J7Q|1|5|U|3758
3J7Q|1|5|A|3759
3J7Q|1|5|A|3760
3J7Q|1|5|C|3761
3J7Q|1|5|U|3762
3J7Q|1|5|A|3763
3J7Q|1|5|U|3764
3J7Q|1|5|G|3765
3J7Q|1|5|A|3766
3J7Q|1|5|C|3767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains