HL_3J7Q_061

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

3J7Q|1|5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_061 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2012

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J7Q|1|5|C|4417
3J7Q|1|5|G|4418
3J7Q|1|5|U|4419
3J7Q|1|5|U|4420
3J7Q|1|5|C|4421
3J7Q|1|5|A|4422
3J7Q|1|5|U|4423
3J7Q|1|5|A|4424
3J7Q|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain I

Ribosomal protein uL16

Chain m

Ribosomal protein eL40