Motif HL_82661.1 Version HL_82661.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_059 | 7A0S | 0.1605 | 0 | X | LSU rRNA | A | 2450 | G | 2451 | U | 2452 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH |
| 2 | HL_4WF9_056 | 4WF9 | 0.1434 | 0 | X | LSU rRNA | A | 2498 | G | 2499 | U | 2500 | U | 2501 | C | 2502 | A | 2503 | C | 2504 | A | 2505 | U | 2506 | cWW | tSH |
| 3 | HL_5J7L_193 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | A | 2471 | G | 2472 | U | 2473 | U | 2474 | C | 2475 | A | 2476 | U | 2477 | A | 2478 | U | 2479 | cWW | tSH |
| 4 | HL_8VTW_059 | 8VTW | 0.1178 | 0 | 1A | LSU rRNA | C | 2471 | G | 2472 | U | 2473 | C | 2474 | C | 2475 | A | 2476 | C | 2477 | A | 2478 | G | 2479 | cWW | tSH |
| 5 | HL_5TBW_061 | 5TBW | 0.1275 | 0 | 1 | LSU rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
| 6 | HL_8C3A_062 | 8C3A | 0.1602 | 0 | 1 | LSU rRNA | C | 2812 | G | 2813 | U | 2814 | U | 2815 | C | 2816 | A | 2817 | U | 2818 | A | 2819 | G | 2820 | cWW | tSH |
| 7 | HL_4V9F_062 | 4V9F | 0.1981 | 0 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2508 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUCAUAG | 2 |
| AGUCCAUAU | 1 |
| AGUUCACAU | 1 |
| AGUUCAUAU | 1 |
| CGUCCACAG | 1 |
| AGCACAUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 3 |
| GUCCAUA | 1 |
| GUUCACA | 1 |
| GUCCACA | 1 |
| GCACAUA | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.15 | Max 0.26
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