HL_3J7Q_076

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_076 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.3737

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3J7Q|1|8|G|121
3J7Q|1|8|G|122
3J7Q|1|8|U|123
3J7Q|1|8|U|124
3J7Q|1|8|C|125
3J7Q|1|8|C|126
3J7Q|1|8|U|127
3J7Q|1|8|C|128
3J7Q|1|8|C|129

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal protein uL23