HL_3J7R_012

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_012 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.175

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3J7R|1|5|G|1178
3J7R|1|5|U|1179
3J7R|1|5|C|1180
3J7R|1|5|C|1181
3J7R|1|5|C|1182
3J7R|1|5|C|1183

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uL18